DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG42797 and herc5.4

DIOPT Version :9

Sequence 1:NP_572574.2 Gene:CG42797 / 31905 FlyBaseID:FBgn0261931 Length:1426 Species:Drosophila melanogaster
Sequence 2:XP_005160166.1 Gene:herc5.4 / 100148091 ZFINID:ZDB-GENE-090311-7 Length:995 Species:Danio rerio


Alignment Length:493 Identity:127/493 - (25%)
Similarity:207/493 - (41%) Gaps:73/493 - (14%)


- Green bases have known domain annotations that are detailed below.


  Fly   959 NILEILRERQGQHTMSRQLR------------EKINILRVEGVPALERLGHDLQLTILLSLFEQE 1011
            ||||||:       |:.|:.            .|||.|    :..|:.:..||....|.....::
Zfish   547 NILEILQ-------MAYQISCSTDITHHDFIIHKINDL----LDLLQTITADLLRMELYMQINED 600

  Fly  1012 IMGFVPIEERSPQGSPVLNSRMPQRAPPPFRRDFEAKLRSF-------YRKLESKGYGQGPHKLK 1069
            ....|.:||...:...:|       ...||..||..|.|.|       :|.:.:...|.....| 
Zfish   601 FHDMVKLEEYYFRTVKIL-------VKFPFASDFITKQRMFNLLQEECFRNVPNLAMGNSFSNL- 657

  Fly  1070 LHIRRSHLLEDAFRRIMSANKKDLQRGRLAVLWDTEEGLDYGGPSREFFFLLSRELFNPYYGLFE 1134
            |||.|..:|.|..:.:.......:.  .|.|.:..|:|:|..|.|.|||.|:|:       ...|
Zfish   658 LHINRESVLTDTLQYLRQNTHSFMH--PLQVAFIGEDGIDMRGLSAEFFSLISK-------SFIE 713

  Fly  1135 YSANDTYTVQVSPLSAFVDNCHDW-----FRFSGRVLGLALVHQYLLDAFFTRPFYKALLRLPVA 1194
            :   |...::|...|....|.|..     |.:.|.:.|:||.:::.::..|....:|.||:...:
Zfish   714 W---DKKILEVHESSLVWFNPHHTRGNKNFYYLGVICGMALYNRHHINIDFPLALFKKLLQQKPS 775

  Fly  1195 LSDLESLDNEFHQSLQWIRDNDIGTGVDLGLTFCVTEELLGSVVDRELKPGGKNIIINEKNKKEY 1259
            |.|||.|.....:||:.:.:.|....|:|       :.|..:...:||.|.|..|.:|:.|:::|
Zfish   776 LDDLEELSPVEARSLKNLLEEDEEEVVNL-------QHLDFTCKGQELVPNGSQIQVNKVNRQKY 833

  Fly  1260 LERMIKWRLERGVQEQTESLVRGFYEVIDSRLVSVFDARELELVIAGTAEIDTNDWRLNTEYRSG 1324
            ::..:.....:.|:.|.|...|||.:.......::|...||:.::.|:.:.:..:.:.:..| .|
Zfish   834 VDLYVDLEFNKSVKTQFEQFTRGFSKGCPLDAWTMFHPEELQELLHGSPQYNWKELQQSASY-EG 897

  Fly  1325 YHDNHQVIVWFWQVIERFSNEQRLRLLQFVTGTSSIPYEGFSALRGSTGPRRFCIEKWGKPNA-- 1387
            ...:.::|..||.|....|.|.:.:.|.|:.||..:|..|.|       .|...|.:...|:.  
Zfish   898 CSASDELIKNFWTVFFELSEENKKKFLMFLYGTERVPAGGLS-------KRALKISQTDCPDPDD 955

  Fly  1388 -LPRAHTCFNRLDLPPYPTPELLYEKLLLAVEETNTFG 1424
             ||.|.|||.||.||.|.....|::||:.|:.....||
Zfish   956 HLPEAQTCFERLVLPKYSDINTLHDKLIHAINSCAVFG 993

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG42797NP_572574.2 WW 638..667 CDD:278809
HECTc 1068..1424 CDD:238033 96/363 (26%)
HECTc 1092..1423 CDD:214523 89/338 (26%)
herc5.4XP_005160166.1 RCC1_2 117..146 CDD:290274
RCC1 133..183 CDD:278826
RCC1 186..235 CDD:278826
RCC1 239..286 CDD:278826
RCC1 294..343 CDD:278826
HECTc 658..993 CDD:294058 95/361 (26%)
HECTc 682..992 CDD:214523 89/336 (26%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG5021
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
21.810

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