DRSC/TRiP Functional Genomics Resources

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Protein Alignment Sbat and AT4G18372

DIOPT Version :9

Sequence 1:NP_001259971.1 Gene:Sbat / 319043 FlyBaseID:FBgn0051950 Length:121 Species:Drosophila melanogaster
Sequence 2:NP_001328000.1 Gene:AT4G18372 / 827565 AraportID:AT4G18372 Length:112 Species:Arabidopsis thaliana


Alignment Length:83 Identity:28/83 - (33%)
Similarity:41/83 - (49%) Gaps:7/83 - (8%)


- Green bases have known domain annotations that are detailed below.


  Fly    44 KLQKWLGRVLRIVITDGRVLVGFFNCTDRDANIVLSMCAEY------LVEGQEPRLLGNVMVPGQ 102
            :|:|.|.|.:.:.|.|||..:|.|:|.|:..||:|....||      .....|.|.||.:::|..
plant    26 RLRKLLFRQMLVGIKDGRFFLGNFHCIDKQGNIILQDTVEYRSIRRSSPSPTEQRCLGMILIPSS 90

  Fly   103 HIVSLSID-EPDPQSSLL 119
            ...|..:| ..|.|.||:
plant    91 CRTSCHVDCSIDEQLSLI 108

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
SbatNP_001259971.1 LSMD1 42..110 CDD:212486 23/71 (32%)
AT4G18372NP_001328000.1 LSMD1 24..98 CDD:212486 23/71 (32%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 1 1.000 - -
Homologene 00.000 Not matched by this tool.
Inparanoid 1 1.050 43 1.000 Inparanoid score I2693
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D1549327at2759
OrthoFinder 1 1.000 - - FOG0004610
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 1 0.900 - - OOG6_105331
Panther 1 1.100 - - LDO PTHR10701
Phylome 1 0.910 - -
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 1 0.960 - -
87.930

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