DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Sbat and snrpb

DIOPT Version :10

Sequence 1:NP_722859.1 Gene:Sbat / 319043 FlyBaseID:FBgn0051950 Length:121 Species:Drosophila melanogaster
Sequence 2:NP_001001198.1 Gene:snrpb / 407857 XenbaseID:XB-GENE-5877283 Length:237 Species:Xenopus tropicalis


Alignment Length:90 Identity:25/90 - (27%)
Similarity:52/90 - (57%) Gaps:10/90 - (11%)


- Green bases have known domain annotations that are detailed below.


  Fly    38 LTPGR-RKLQKWLGRVLRIVITDGRVLVGFFNCTDRDANIVLSMCAEY---------LVEGQEPR 92
            :|.|: .|:.:.:...:|.::.|||:.:|.|...|:..|::|..|.|:         ..|.:|.|
 Frog     1 MTVGKSSKMLQHIDYRMRCILQDGRIFIGTFKAFDKHMNLILCDCDEFRKIKPKNSKQPEREEKR 65

  Fly    93 LLGNVMVPGQHIVSLSIDEPDPQSS 117
            :||.|::.|:::||::::.|.|:.:
 Frog    66 VLGLVLLRGENLVSMTVEGPPPKDT 90

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
SbatNP_722859.1 LSMD1 42..110 CDD:212486 21/77 (27%)
snrpbNP_001001198.1 Sm_B 5..83 CDD:212464 21/77 (27%)

Return to query results.
Submit another query.