DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment LysRS and aspS

DIOPT Version :9

Sequence 1:NP_001188571.1 Gene:LysRS / 31904 FlyBaseID:FBgn0027084 Length:607 Species:Drosophila melanogaster
Sequence 2:NP_416380.1 Gene:aspS / 946385 ECOCYCID:EG10097 Length:590 Species:Escherichia coli


Alignment Length:601 Identity:140/601 - (23%)
Similarity:233/601 - (38%) Gaps:185/601 - (30%)


- Green bases have known domain annotations that are detailed below.


  Fly   141 KLSVAGRVHAIRESGAKLIFYDLRG-EGVKVQVMASAKSYKSEADFEIDTSKLRRGDIIGVVGH- 203
            ::::.|.|:..|:.|: |||.|:|. ||: |||...    ...||.....|:||....|.|.|. 
E. coli    17 QVTLCGWVNRRRDLGS-LIFIDMRDREGI-VQVFFD----PDRADALKLASELRNEFCIQVTGTV 75

  Fly   204 PGKTKK--------GELSVMPSEIKLLSPCLHMLPHLHFGLKDKETRYRQRYLDLILNNNVREKF 260
            ..:.:|        ||:.|:.|.:.:::.. .:||.....:..:|.|.:.||||| ....:.::.
E. coli    76 RARDEKNINRDMATGEIEVLASSLTIINRA-DVLPLDSNHVNTEEARLKYRYLDL-RRPEMAQRL 138

  Fly   261 QIRAKIISYVRQFLDRLGFLEIETPMMNMIAGGATAKPFVTHHNDLKMDLF-MRIAPELYHKMLV 324
            :.||||.|.||:|:|..|||:|||||:.. |....|:.::......|...: :..:|:|:.::|:
E. coli   139 KTRAKITSLVRRFMDDHGFLDIETPMLTK-ATPEGARDYLVPSRVHKGKFYALPQSPQLFKQLLM 202

  Fly   325 VGGLDRVYEIGRQFRNEGIDLTHNPEFTTCEFYMAYADYADIMDITEQLVSGM---VKAI-RGSY 385
            :.|.||.|:|.:.||:|.:.....||||..:...::.....:.::.|.||..:   ||.: .|.:
E. coli   203 MSGFDRYYQIVKCFRDEDLRADRQPEFTQIDVETSFMTAPQVREVMEALVRHLWLEVKGVDLGDF 267

  Fly   386 KVIYHPE-----GPEGPE--------------QELDF-------TPPFKRVSMI----------K 414
            .|:...|     |.:.|:              :.::|       ..|..||:.:          |
E. coli   268 PVMTFAEAERRYGSDKPDLRNPMELTDVADLLKSVEFAVFAGPANDPKGRVAALRVPGGASLTRK 332

  Fly   415 TLEE----------------KLQVKFPAADTFNSPETNQFLSQLCAKHQVECPAPRTTARLLD-- 461
            .::|                |:..:....:..|||......:::     :|....||.|:..|  
E. coli   333 QIDEYGNFVKIYGAKGLAYIKVNERAKGLEGINSPVAKFLNAEI-----IEDILDRTAAQDGDMI 392

  Fly   462 -------KLVGE--------------FIEEFCVNPTFICEHPQIMSPLAKYHRSIPGLTERFELF 505
                   |:|.:              ..:|....|.::.:.|.....      ...|||.....|
E. coli   393 FFGADNKKIVADAMGALRLKVGKDLGLTDESKWAPLWVIDFPMFEDD------GEGGLTAMHHPF 451

  Fly   506 VAKKE-------------ICNAYTELNDPVV-------------------------------QRE 526
            .:.|:             :.|||    |.|:                               |||
E. coli   452 TSPKDMTAAELKAAPENAVANAY----DMVINGYEVGGGSVRIHNGDMQQTVFGILGINEEEQRE 512

  Fly   527 RFEQQASDKAAGDDEAQLVDENFCTSLEYGLPPTGGFGMGIDRLAMFLTDSNNIKEVLLFP---- 587
            :|             ..|:|     :|:||.||..|...|:|||.|.||.::||::|:.||    
E. coli   513 KF-------------GFLLD-----ALKYGTPPHAGLAFGLDRLTMLLTGTDNIRDVIAFPKTTA 559

  Fly   588 -----AMKPEDANRTA 598
                 ...|..||.||
E. coli   560 AACLMTEAPSFANPTA 575

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
LysRSNP_001188571.1 PLN02502 42..593 CDD:215278 136/594 (23%)
LysRS_N 141..250 CDD:239817 34/118 (29%)
LysRS_core 253..591 CDD:238398 99/470 (21%)
aspSNP_416380.1 aspS 1..587 CDD:234775 140/601 (23%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
10.910

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