DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment LysRS and SLM5

DIOPT Version :9

Sequence 1:NP_001188571.1 Gene:LysRS / 31904 FlyBaseID:FBgn0027084 Length:607 Species:Drosophila melanogaster
Sequence 2:NP_009953.1 Gene:SLM5 / 850388 SGDID:S000000618 Length:492 Species:Saccharomyces cerevisiae


Alignment Length:548 Identity:111/548 - (20%)
Similarity:202/548 - (36%) Gaps:120/548 - (21%)


- Green bases have known domain annotations that are detailed below.


  Fly   114 FHVSSSLEDFIAKYENSLKEGETLENV------KLSVAGRVHAIRESGAKLIFYDLR-GEGVKVQ 171
            ||..:.|:.  .::.:||......|.|      .:|:.|.:.:||.. .::.|.||: |..|...
Yeast     2 FHAFTFLKG--GRFYSSLTVKSLYEQVHHTSHDPISINGWIKSIRLL-KRIAFLDLQDGTSVNPL 63

  Fly   172 VMASAKSYKSEADFEIDTSKLRRGDIIGV-----VGHPGKTKKGELSVM--PSEIKLLSPC---- 225
            .:....:...|..|   ...|:.|..:.:     ...|.:.:..||.:.  ...|||:.|.    
Yeast    64 RIVIPLTNTDEVQF---LKILKTGQTLSISNATWQSTPNRKQPFELQIKNPVKSIKLVGPVSENY 125

  Fly   226 -----------LHMLPHLHFGLKDKETRYRQRYLDLILNNNVREKFQIRAKIISYVRQFLDRLGF 279
                       |..||.|         :||..||..||......:||...        :..:..|
Yeast   126 PLQKKYQTLRYLRSLPTL---------KYRTAYLSAILRLRSFVEFQFML--------YFQKNHF 173

  Fly   280 LEIETPMM--NMIAGGATAKPFVTHHNDLKMDLF-----MRIAPELYHKMLVVGGLDRVYEIGRQ 337
            .::..|::  |...|........|:.:......|     :.::.:|:.::|.: .|.|.:.:...
Yeast   174 TKVSPPILTSNDCEGAGELFQVSTNTSPTASSYFGKPTYLTVSTQLHLEILAL-SLSRCWTLSPC 237

  Fly   338 FRNEGIDL-THNPEFTTCEFYMAYADYA-DIMDITEQLVSGMVKAIRGSYKVIYHPEGPEGPEQE 400
            ||.|..|. .|..||...|..|.:.:.. ::....|..:..::||...:.:.:...:.....|..
Yeast   238 FRAEKSDTPRHLSEFWMLEVEMCFVNSVNELTSFVETTIKHIIKACIDNQQELLPKQFISSQENN 302

  Fly   401 LDFTPPFKRVSMIKTLEEKLQVKFPAADTFNSP------------------ETNQFLSQLCAKHQ 447
            ..        |.:...:|..|:|....|..|..                  |.:.|      |::
Yeast   303 AS--------SELSINQETQQIKTRWEDLINEKWHNITYTNAIEILKKRHNEVSHF------KYE 353

  Fly   448 VECPAPRTTARLLDK-LVGEFIEEFCVNPTFICEHPQIMSPLAKYHRSIPGLTER-FELFVAKKE 510
            .:...|..|..  :| |.||:.:    :|.|:.::|::..|......|.|..|.. |:|.|.   
Yeast   354 PKWGQPLQTEH--EKFLAGEYFK----SPVFVTDYPRLCKPFYMKQNSTPDDTVGCFDLLVP--- 409

  Fly   511 ICNAYTELNDPVVQRERFEQQASD-KAAGDDEAQLVDENFCTSL-EYGLPPTGGFGMGIDRLAMF 573
               ...|:....::.:.:::...: ||.|.:.:..:|  :..|| :.|..|.||||:|.:|...:
Yeast   410 ---GMGEIIGGSLREDDYDKLCREMKARGMNRSGELD--WYVSLRKEGSAPHGGFGLGFERFISY 469

  Fly   574 LTDSNNIKEVLLFPAMKPEDANRTAAET 601
            |..::|||:.:.|        .||:||:
Yeast   470 LYGNHNIKDAIPF--------YRTSAES 489

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
LysRSNP_001188571.1 PLN02502 42..593 CDD:215278 107/538 (20%)
LysRS_N 141..250 CDD:239817 28/131 (21%)
LysRS_core 253..591 CDD:238398 70/368 (19%)
SLM5NP_009953.1 asnS 16..492 CDD:273086 108/532 (20%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.910

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