DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Rrp40 and EXOSC3

DIOPT Version :9

Sequence 1:NP_001285565.1 Gene:Rrp40 / 319033 FlyBaseID:FBgn0260648 Length:232 Species:Drosophila melanogaster
Sequence 2:NP_057126.2 Gene:EXOSC3 / 51010 HGNCID:17944 Length:275 Species:Homo sapiens


Alignment Length:248 Identity:100/248 - (40%)
Similarity:157/248 - (63%) Gaps:26/248 - (10%)


- Green bases have known domain annotations that are detailed below.


  Fly     7 IVMPGERI------------AAIE-------ELAKSKRVILGPGLRRLDDTVVASKAGPLRHKEP 52
            :|:|||.:            .|:|       ......||:.||||||..|.::.:|.|.||||||
Human    27 VVLPGEELLLPEQEDAEGPGGAVERPLSLNARACSRVRVVCGPGLRRCGDRLLVTKCGRLRHKEP 91

  Fly    53 GT------FWVDNYQRRYIPARGDLILGIVRAKAGDLYRVDIGATDTASISYLAFEAASKKNRPD 111
            |:      :|||:.|:||:|.:||.::|||.||:||:::||:|.::.||:|||:||.|:|:|||:
Human    92 GSGSGGGVYWVDSQQKRYVPVKGDHVIGIVTAKSGDIFKVDVGGSEPASLSYLSFEGATKRNRPN 156

  Fly   112 LIPGDLIYARVLNASADIEPELVCVNSVGKSGKLGVL-TDGFFFKCSLNLGRMLLRENCPVLAAL 175
            :..|||||.:.:.|:.|:|||:||::|.|::..:||: .||..||.:|.|.|.||..:|.::..:
Human   157 VQVGDLIYGQFVVANKDMEPEMVCIDSCGRANGMGVIGQDGLLFKVTLGLIRKLLAPDCEIIQEV 221

  Fly   176 TRELPYEIAVGVNGRIWLKAHSLKETVALANAISALEQSGCAEIDKICGNLGD 228
            .:..|.||..|:|||||:||.::::|:.|||.:.|.|.....:..:|...|.:
Human   222 GKLYPLEIVFGMNGRIWVKAKTIQQTLILANILEACEHMTSDQRKQIFSRLAE 274

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Rrp40NP_001285565.1 Rrp4 5..213 CDD:224022 97/231 (42%)
S1_Rrp40 63..148 CDD:240216 42/84 (50%)
EXOSC3NP_057126.2 ECR1_N 26..274 CDD:330847 100/246 (41%)
S1_Rrp40 108..193 CDD:240216 42/84 (50%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C165151924
Domainoid 1 1.000 149 1.000 Domainoid score I4447
eggNOG 1 0.900 - - E1_COG1097
Hieranoid 1 1.000 - -
Homologene 1 1.000 - - H6867
Inparanoid 1 1.050 200 1.000 Inparanoid score I3789
Isobase 1 0.950 - 0.878984 Normalized mean entropy S1604
OMA 1 1.010 - - QHG54235
OrthoDB 1 1.010 - - D1284731at2759
OrthoFinder 1 1.000 - - FOG0004390
OrthoInspector 1 1.000 - - oto88430
orthoMCL 1 0.900 - - OOG6_102463
Panther 1 1.100 - - LDO PTHR21321
Phylome 1 0.910 - -
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R2268
SonicParanoid 1 1.000 - - X3108
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 1 0.960 - -
User_Submission 00.000 Not matched by this tool.
1716.750

Return to query results.
Submit another query.