DRSC/TRiP Functional Genomics Resources

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Protein Alignment Rrp40 and exosc3

DIOPT Version :9

Sequence 1:NP_001285565.1 Gene:Rrp40 / 319033 FlyBaseID:FBgn0260648 Length:232 Species:Drosophila melanogaster
Sequence 2:XP_002936379.2 Gene:exosc3 / 100491278 XenbaseID:XB-GENE-966926 Length:250 Species:Xenopus tropicalis


Alignment Length:231 Identity:96/231 - (41%)
Similarity:148/231 - (64%) Gaps:19/231 - (8%)


- Green bases have known domain annotations that are detailed below.


  Fly     1 MSATS------TIVMPGE--------RIAAIE----ELAKSKRVILGPGLRRLDDTVVASKAGPL 47
            |||.|      .||:||:        |.|.:.    ..:...||:.||||.|.:|.::.:|.|.|
 Frog     1 MSAVSIEDAVGQIVLPGDVLVLSTQSRDAPLSLSGPSTSNRPRVVCGPGLMRQEDDLLVNKCGLL 65

  Fly    48 RHKEPGTFWVDNYQRRYIPARGDLILGIVRAKAGDLYRVDIGATDTASISYLAFEAASKKNRPDL 112
            ||::|..:|||:.|:||:|.:||.::|||..|:||:::||:|.::.||:||||||.|:|||||::
 Frog    66 RHRDPAIYWVDSQQKRYVPVKGDHVIGIVTTKSGDIFKVDVGGSEQASLSYLAFEGATKKNRPNV 130

  Fly   113 IPGDLIYARVLNASADIEPELVCVNSVGKSGKLGVL-TDGFFFKCSLNLGRMLLRENCPVLAALT 176
            ..|||:|.:.:.|:.|:|||:.|::|.||:...||: .||...|.||.|.|.||.....::..|.
 Frog   131 KVGDLVYGQFIVANKDMEPEMACIDSSGKANGKGVIGQDGLMLKVSLGLVRKLLIPQNDIVQELM 195

  Fly   177 RELPYEIAVGVNGRIWLKAHSLKETVALANAISALE 212
            ...|.|:.:|:|||||:||.::::|:.:||.:.|.|
 Frog   196 NIFPMEVVIGMNGRIWVKAKTVQQTLIVANLLEACE 231

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Rrp40NP_001285565.1 Rrp4 5..213 CDD:224022 93/227 (41%)
S1_Rrp40 63..148 CDD:240216 42/84 (50%)
exosc3XP_002936379.2 Rrp4 10..231 CDD:224022 91/220 (41%)
S1_Rrp40 81..166 CDD:240216 42/84 (50%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 1 1.000 147 1.000 Domainoid score I4495
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 1 1.000 - - H6867
Inparanoid 1 1.050 190 1.000 Inparanoid score I3771
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D1284731at2759
OrthoFinder 1 1.000 - - FOG0004390
OrthoInspector 1 1.000 - - oto102309
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 1 1.000 - - X3108
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
88.060

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