DRSC/TRiP Functional Genomics Resources

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Protein Alignment Lst8 and Mlst8

DIOPT Version :10

Sequence 1:NP_572572.1 Gene:Lst8 / 31903 FlyBaseID:FBgn0264691 Length:313 Species:Drosophila melanogaster
Sequence 2:XP_017173075.1 Gene:Mlst8 / 56716 MGIID:1929514 Length:328 Species:Mus musculus


Alignment Length:317 Identity:155/317 - (48%)
Similarity:217/317 - (68%) Gaps:12/317 - (3%)


- Green bases have known domain annotations that are detailed below.


  Fly     7 LILATGGYDHTIKVWQAHTGNCIKTMRFVETSQVNALDRTPDKTRLAACGYQCIRLYDLESNCTA 71
            :||||.|||||::.||||:|.|.:|::. :.||||||:.|||::.:||.|||.||:|||.||...
Mouse    13 VILATAGYDHTVRFWQAHSGICTRTVQH-QDSQVNALEITPDRSMIAAAGYQHIRMYDLNSNNPN 76

  Fly    72 PVINFDGVQKNVTRLGFQEDGNWMFTAGEDHHVRIWDMIAAPPHCSRIFDCEAPVNAACLHPNQV 136
            |:|::|||.||:..:||.|||.||:|.|||...||||:.:....|.|||...||:|..||||||.
Mouse    77 PIISYDGVSKNIASVGFHEDGRWMYTGGEDCTARIWDLRSRNLQCQRIFQVNAPINCVCLHPNQA 141

  Fly   137 EIAMGSQNGSVFLWDVKSERHERIVPEVDASIQDVAISPDGRYLAAANNKGNCYIWSLTSQ-DQK 200
            |:.:|.|:|::.:||:|::.:|:::||.::||....|.||..|:||.|:.||||:|:||.. ...
Mouse   142 ELIVGDQSGAIHIWDLKTDHNEQLIPEPESSITSAHIDPDASYMAAVNSAGNCYVWNLTGGIGDD 206

  Fly   201 MSTLRPNRKIPAHSRYILRCKFSPDSR--LLLTTSGDGTVCIWKTDDFSKWRELCIENY------ 257
            ::.|.|..|||||:||.|:|:|||||.  ||.|.|.|.|..||:|.:||...||.|::.      
Mouse   207 VTQLIPKTKIPAHTRYALQCRFSPDSTCVLLATCSADQTCKIWRTSNFSLMTELSIKSSNPGESS 271

  Fly   258 --WVWDAAFSADSKWLFTASSDGIARLWKLQTKSSIRDYTGHTKAITALSFKDEIVG 312
              |:|..|||.||:::.|||||.:||||.::|....|:|.||.||:..|:|.|.::|
Mouse   272 RGWMWGCAFSGDSQYIVTASSDNLARLWCVETGEIKREYGGHQKAVVCLAFNDSVLG 328

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Lst8NP_572572.1 WD40 <8..306 CDD:441893 152/308 (49%)
WD40 repeat 41..78 CDD:293791 20/36 (56%)
WD40 repeat 83..121 CDD:293791 18/37 (49%)
WD40 repeat 127..162 CDD:293791 15/34 (44%)
WD40 repeat 168..205 CDD:293791 15/37 (41%)
WD40 repeat 217..254 CDD:293791 20/38 (53%)
WD40 repeat 259..283 CDD:293791 13/23 (57%)
Mlst8XP_017173075.1 WD40 <10..322 CDD:441893 152/309 (49%)
WD40 repeat 47..83 CDD:293791 19/35 (54%)
WD40 repeat 89..127 CDD:293791 19/37 (51%)
WD40 repeat 131..167 CDD:293791 15/35 (43%)
WD40 repeat 174..217 CDD:293791 17/42 (40%)
WD40 repeat 224..260 CDD:293791 18/35 (51%)
WD40 repeat 275..301 CDD:293791 15/25 (60%)

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