DRSC/TRiP Functional Genomics Resources

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Protein Alignment Lst8 and wat1

DIOPT Version :10

Sequence 1:NP_572572.1 Gene:Lst8 / 31903 FlyBaseID:FBgn0264691 Length:313 Species:Drosophila melanogaster
Sequence 2:NP_595682.1 Gene:wat1 / 2540645 PomBaseID:SPBC21B10.05C Length:314 Species:Schizosaccharomyces pombe


Alignment Length:309 Identity:137/309 - (44%)
Similarity:189/309 - (61%) Gaps:9/309 - (2%)


- Green bases have known domain annotations that are detailed below.


  Fly     4 QQQLILATGGYDHTIKVWQAHTGNCIKTMRFVETSQVNALDRTPDKTRLAACGYQCIRLYDLESN 68
            |..::|.:.||||||:.|:|.:|.|.:|::..: ||||.|..:|||..|||.|...:||||:.::
pombe     8 QHSVLLVSSGYDHTIRFWEALSGICSRTIQHAD-SQVNRLCISPDKKFLAAAGNPHVRLYDINTS 71

  Fly    69 CTAPVINFDGVQKNVTRLGFQEDGNWMFTAGEDHHVRIWDMIAAPPHCSRIFDCEAPVNAACLHP 133
            ...|::.|:|...|||.:.|..||.|:.|:.||..|::|||.|  |...|.:|.::|||...:||
pombe    72 SQMPLMTFEGHTNNVTAIAFHCDGKWLATSSEDGTVKVWDMRA--PSVQRNYDHKSPVNDLLIHP 134

  Fly   134 NQVEIAMGSQNGSVFLWDV--KSERHERIVPEVDASIQDVAISPDGRYLAAANNKGNCYIWSLTS 196
            ||.|:....|:|.|..||:  .|..|| ::||.|..:..:.:..||..|.|.|||||||:|.:.:
pombe   135 NQGELLSCDQSGRVRAWDLGENSCTHE-LIPEEDVPMSSITVGSDGSMLIAGNNKGNCYVWRMLN 198

  Fly   197 QDQKMSTLRPNRKIPAHSRYILRCKFSPDSRLLLTTSGDGTVCIWKTDDFSKWRELCIENY--WV 259
            . |..|.|:|..|..||.|||.||..|||.:.|.|.|.|.||.||.|:|.|...|..::.:  ||
pombe   199 H-QGASLLQPVVKFQAHQRYITRCVLSPDVKHLATCSADATVNIWSTEDMSFMLERRLQGHQRWV 262

  Fly   260 WDAAFSADSKWLFTASSDGIARLWKLQTKSSIRDYTGHTKAITALSFKD 308
            ||.||||||.:|.|||||.:||||:|.:..:||.|:||.||...::..|
pombe   263 WDCAFSADSTYLVTASSDHVARLWELSSGETIRQYSGHHKAAVCVALND 311

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Lst8NP_572572.1 WD40 <8..306 CDD:441893 135/301 (45%)
WD40 repeat 41..78 CDD:293791 15/36 (42%)
WD40 repeat 83..121 CDD:293791 16/37 (43%)
WD40 repeat 127..162 CDD:293791 14/36 (39%)
WD40 repeat 168..205 CDD:293791 14/36 (39%)
WD40 repeat 217..254 CDD:293791 18/36 (50%)
WD40 repeat 259..283 CDD:293791 17/23 (74%)
wat1NP_595682.1 WD40 <12..308 CDD:441893 135/300 (45%)
WD40 repeat 44..81 CDD:293791 15/36 (42%)
WD40 repeat 86..122 CDD:293791 16/37 (43%)
WD40 repeat 128..163 CDD:293791 14/35 (40%)
WD40 repeat 170..212 CDD:293791 17/42 (40%)
WD40 repeat 218..256 CDD:293791 18/37 (49%)
WD40 repeat 262..286 CDD:293791 17/23 (74%)

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