DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Gga and tom1

DIOPT Version :9

Sequence 1:NP_572571.1 Gene:Gga / 31902 FlyBaseID:FBgn0030141 Length:660 Species:Drosophila melanogaster
Sequence 2:NP_001016770.1 Gene:tom1 / 549524 XenbaseID:XB-GENE-5834946 Length:495 Species:Xenopus tropicalis


Alignment Length:521 Identity:99/521 - (19%)
Similarity:188/521 - (36%) Gaps:127/521 - (24%)


- Green bases have known domain annotations that are detailed below.


  Fly    10 EMLERATNPAQKIDELGVQM-FCIVVKSN----AQLVHKAQEMIVAKVRSTNVTEATRAISLLEE 69
            :.:|:||:.:.:.::.|:.| .|.::...    ...:...::.||.   :.|..|...|::|||.
 Frog    15 QRIEKATDGSLRSEDWGLNMEVCDIINETEDGPKDAIRALKKRIVG---NKNFREVMLALTLLET 76

  Fly    70 CMTQCGDDFQDEASKFRFL-NELIRLVSKKYKGAETPHEVKQRIMECLLLWTTEF---PQRQKIR 130
            |:..||..|........|: ..|::.:..|   ...|..|..:::..:..|...|   |....:.
 Frog    77 CVKNCGHRFHVLVGSQEFVEGVLVKTILPK---NNPPAIVHDKVLILIQAWADAFRSSPDLTGVV 138

  Fly   131 DAYDMLRKEG------DIE-----HGTTEAAVAKRESVLGTIDEAMFAK---LIKSNNPENFKRA 181
            ..|:.||::|      |::     |....:..|...........:.|.:   .:.|..|      
 Frog   139 SVYEDLRRKGLEFPMTDLDTLSPIHTPQPSFSAPESPSQQDCPSSEFPQRGGSVHSEPP------ 197

  Fly   182 NLLLQYRMAQEARRN-------DLLAQHRLVLCEVQETMQLLNQMLDTYDP--ANQDVSETLHEL 237
                .|.:...|..:       |.||:....|..|....:::::||....|  |.|...|.|.||
 Frog   198 ----PYNVPATASGDTAVTPTPDQLAKLHSELEIVNGNAKVMSEMLTELVPQTAKQSDVELLQEL 258

  Fly   238 YKSCK-KHKPIFQHLPQLLDDSDAQLVADTLDANCAL---LATMQRYKLLV---PSPTRSTAAAL 295
            .::|: ..:.:.:.:|::..:   ||..:.|..|..|   ....:|::.::   ..|......|.
 Frog   259 NRTCRAMQQRVLELIPRVTHE---QLTEELLIVNDNLNNVFIRHERFERMLAGQQGPVAEAQVAR 320

  Fly   296 TTSAPTVASSVKSTASSTTATTSSNNAQLLNELLGDLLIDGSNKAATTATTSLPNAAASGSNPLA 360
            ....|.....::.|.|::..|.|:..|             |.|.::.:.:.:|  .:..|:....
 Frog   321 DRVLPPSLIDLEETPSNSAPTLSTQLA-------------GINLSSGSVSGTL--QSLGGTKKPD 370

  Fly   361 DLSDIFSSALAESEAKQQSQPFQNATTLLEPQVISQGTTTEALANG------NGGSASKVP---- 415
            |..|:|:.....|.|.|     :.:....|||      .|:.||..      |.|:   :|    
 Frog   371 DDFDMFALTRGSSLADQ-----RKSVKYEEPQ------ATDGLAGALDTRQQNTGA---IPAAQN 421

  Fly   416 ------------ETIRKMPQIDMLSEELFQQILPTQ----DRMPSF--------------KRDPE 450
                        :|..::...|.::.|.|.:.|..:    ||:||.              |||.:
 Frog   422 NFMDDIEKWLSSDTGEEIEGEDGVTSEEFDKFLEERAKAADRIPSLSSPGTEPPRAAPSTKRDKK 486

  Fly   451 K 451
            :
 Frog   487 E 487

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
GgaNP_572571.1 VHS_GGA 7..144 CDD:239624 31/153 (20%)
GAT 210..284 CDD:281166 17/79 (22%)
Alpha_adaptinC2 543..644 CDD:197886
tom1NP_001016770.1 VHS_Tom1 12..148 CDD:340792 29/138 (21%)
GAT_TOM1 215..309 CDD:260094 22/96 (23%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D594067at2759
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
11.010

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