DRSC/TRiP Functional Genomics Resources

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Protein Alignment Gga and Tom1l2

DIOPT Version :9

Sequence 1:NP_572571.1 Gene:Gga / 31902 FlyBaseID:FBgn0030141 Length:660 Species:Drosophila melanogaster
Sequence 2:XP_038942234.1 Gene:Tom1l2 / 360537 RGDID:1306728 Length:592 Species:Rattus norvegicus


Alignment Length:552 Identity:109/552 - (19%)
Similarity:208/552 - (37%) Gaps:123/552 - (22%)


- Green bases have known domain annotations that are detailed below.


  Fly     5 ESIMEEMLERATNPAQKIDELGVQM-FCIVVKSNAQLVHKAQEMIVAKVR-STNVTEATRAISLL 67
            :..:.:..|:||:.:.:.::..:.| .|.::....:....|...:..::. :.|..|...|:::|
  Rat    74 KQFLSDFTEKATDGSLQSEDWTLNMEICDIINETEEGPKDAIRALKKRLSGNRNYREVMLALTVL 138

  Fly    68 EECMTQCGDDFQDEASKFRFLNE-LIRLVSKKYKGAETPHEVKQRIMECLLLWTTEF---PQRQK 128
            |.|:..||..|....:...|::. |:|::|.|   ...|..|:.:::..:..|...|   |....
  Rat   139 ETCVKNCGHRFHLLVANRDFIDSVLVRIISPK---NNPPTIVQDKVLALIQAWADAFRSSPDLTG 200

  Fly   129 IRDAYDMLRKEG------DIE-----HGTTEAAVAKRESVLGTIDEAMFAKLIKSNNPENFKRAN 182
            :...|:.|:::|      |::     | |.:.:|.:.:.. .||..:.......:.:..:...| 
  Rat   201 VVHIYEELKRKGIEFPMADLDALSPIH-TPQRSVPEMDPA-ATIPRSQLQPRTTAGSYSSPPAA- 262

  Fly   183 LLLQYRMAQE---------ARRNDLLAQHRLVLCEVQETMQLLNQMLDTYDPANQDVS--ETLHE 236
               .|...|.         ...::.:|:.|..|..|:...:::::||....|..:|.|  |.|.|
  Rat   263 ---PYSTLQAPALSVTGPITANSEQIARLRSELDIVRGNTKVMSEMLTEMVPGQEDSSDLELLQE 324

  Fly   237 LYKSCKKHKPIFQH-LPQLLDD-SDAQLVADTLDANCALLATMQRYKL----------------L 283
            |.::|:    ..|| :.:|:.. |:.::..:.|..|..|.....||:.                :
  Rat   325 LNRTCR----AMQHRIVELISRVSNEEVTEELLHVNDDLNNVFLRYERFERYRSGRSVQNASNGV 385

  Fly   284 VPSPTRSTAAALTTSAPTVASSVKSTASSTTATTSSNNAQLLNELLGDLLIDGSNKAATTATTSL 348
            :...|......|...:|.|.|.:    ..:||..||.::||....||...:.|:       .:||
  Rat   386 LSEVTEDNLIDLGPGSPAVVSPM----VGSTAPPSSLSSQLAGLDLGTESVSGT-------LSSL 439

  Fly   349 PNAAASGSNPLADLSDIFSSALAESEAKQQSQPFQNATTLLEPQVISQGTTTEALAN-------- 405
            ......      |..|:|:.....|.|:|     :...|..:||.:  |....||.|        
  Rat   440 QQCKPQ------DGFDMFAQTRGNSLAEQ-----RKTVTYEDPQAV--GGLASALDNRKQSSEMR 491

  Fly   406 GNGGSASKVP-------------------ETIRKMPQIDMLSEELFQQILPTQDRMPSFKRDPEK 451
            |.||.:...|                   :.|....:.|:..::|.:.:  |.:....|..:..|
  Rat   492 GRGGDSDLQPIDSWLMTQGMIPVAQPSVMDDIEVWLRTDLKGDDLEEGV--TSEEFDKFLEERAK 554

  Fly   452 I--TLNDLARERMHIKAPEEPTTANDPASDSA 481
            .  |:.||         |..||.|..|||:::
  Rat   555 AAETVPDL---------PSPPTEAPAPASNTS 577

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
GgaNP_572571.1 VHS_GGA 7..144 CDD:239624 29/153 (19%)
GAT 210..284 CDD:281166 19/93 (20%)
Alpha_adaptinC2 543..644 CDD:197886
Tom1l2XP_038942234.1 VHS_ENTH_ANTH 82..212 CDD:413366 27/132 (20%)
GAT_TM1L2 282..373 CDD:410585 23/94 (24%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C166334896
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
21.840

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