DRSC/TRiP Functional Genomics Resources

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Protein Alignment Gga and Tom1l1

DIOPT Version :10

Sequence 1:NP_572571.1 Gene:Gga / 31902 FlyBaseID:FBgn0030141 Length:660 Species:Drosophila melanogaster
Sequence 2:NP_001240788.1 Gene:Tom1l1 / 287622 RGDID:1562626 Length:474 Species:Rattus norvegicus


Alignment Length:576 Identity:120/576 - (20%)
Similarity:209/576 - (36%) Gaps:170/576 - (29%)


- Green bases have known domain annotations that are detailed below.


  Fly    11 MLERATNPAQKIDELGVQM-FCIVVKSNAQLVHKAQEMIVAKV-RSTNVTEATRAISLLEECMTQ 73
            ::|:||....:.::.|..| .|.::.:.......|.:.:..:: ::.|..|...::||::.||..
  Rat    18 LIEKATFAGVQTEDWGQFMHICDIINTTQDGPKDAVKALKKRISKNYNHKEIQLSLSLIDMCMQN 82

  Fly    74 CGDDFQDEASKFRFLNE-LIRLVSKKYKGAETPHEVKQRIMECLLLWTTEFP---QRQKIRDAY- 133
            ||..||....|..|:.: |::|::.:|   ..|.|.:.||:..:.:|:..||   ...::::.| 
  Rat    83 CGPSFQSLIVKKEFVKDTLVKLLNPRY---TLPLETQNRILSFIKMWSQGFPGGVDVSEVKEVYL 144

  Fly   134 DMLRK-------EGDIEHGTTEAAVAKRESVLGTIDEAMFAKLIKSNNPENFKRANLLLQYRMAQ 191
            |:|:|       :|:.|        .|:|           |..|..:.|.:...|..|       
  Rat   145 DLLKKGVQFPPLDGEPE--------TKQE-----------AGQISPSRPTSVPTAPAL------- 183

  Fly   192 EARRNDLLAQHRLVLCEVQETMQLLNQMLD----------------TYDPANQDVSETLHELYKS 240
                :.::|.....:..|.|.:..|:..||                |....|.:..|.|.:|||:
  Rat   184 ----SSIIAPKNPTISLVPEQIGKLHSELDMVKMNVKVMTAILMENTPGSENHEDIELLRKLYKT 244

  Fly   241 CKKHKPIFQHLPQLLDDSD--AQLVADTLDANCALLA----TMQRYKLLVPSPTRSTAAALTTSA 299
            .::.:.....|..::::.|  .:|:....|.|.|:|.    |..:.:||  ...|:...|.|:|.
  Rat   245 GREMQERIMDLLVVVENEDVTVELIQVNEDLNNAILGYERFTRNQQRLL--EQKRNPTEANTSSE 307

  Fly   300 PTVASSVKSTASSTTATTSSNNAQLLNELLGDLLIDGSNKAATTATTSLP----NAAASGSNPLA 360
            |                 |:.:..|||  ||.:       |....::..|    ||..||.|   
  Rat   308 P-----------------SAPSCDLLN--LGPV-------APVPVSSEGPLNSVNAQLSGLN--- 343

  Fly   361 DLSDIFSSALAESEAKQQSQPFQNATTLLEPQVISQGTTTEALANGNGGSASKVPETIRKMPQID 425
                          ...||....|.   |.|.:                           .||:|
  Rat   344 --------------VSSQSPVITNN---LYPSL---------------------------QPQMD 364

  Fly   426 MLSEELFQQILPTQDRMPSFKRDPEKITLNDLARERMHIKAPEEPTTA-NDPASDSAPAIATATA 489
            :|:.|        ...:|:.  .|:: |..:||....:...|:..::. ..|.|     :.||.|
  Rat   365 LLASE--------DTEVPTL--FPQR-TSQNLASSHTYDNFPDHSSSVLLQPVS-----LHTAPA 413

  Fly   490 TVDSIDDVPLLSDDVEKKDEAVVAP----VTVVPPAKPLSE-INVELDNIQATGEQ 540
            ...|....||.|:....|:.|:..|    |....|..|.:| |..|:|.....|.|
  Rat   414 APSSQRLPPLPSNHPVLKNSALQPPSYYEVMEFDPLAPTTEAIYEEIDASHKKGAQ 469

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
GgaNP_572571.1 VHS_GGA_metazoan 8..144 CDD:340769 34/146 (23%)
GAT_GGA_meta 201..283 CDD:410582 20/103 (19%)
Alpha_adaptinC2 543..644 CDD:197886
Tom1l1NP_001240788.1 VHS_Tom1L1 14..150 CDD:340794 32/134 (24%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 155..175 6/38 (16%)
GAT_TM1L1 198..289 CDD:410584 19/90 (21%)
Interaction with GRB2. /evidence=ECO:0000250 391..394 0/2 (0%)
SH3-binding. /evidence=ECO:0000250 420..424 1/3 (33%)
Interaction with PIK3R1. /evidence=ECO:0000250 441..444 0/2 (0%)
SH2-binding. /evidence=ECO:0000250 457..460 0/2 (0%)
Blue background indicates that the domain is not in the aligned region.

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