DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Gga and apt-9

DIOPT Version :9

Sequence 1:NP_572571.1 Gene:Gga / 31902 FlyBaseID:FBgn0030141 Length:660 Species:Drosophila melanogaster
Sequence 2:NP_509853.2 Gene:apt-9 / 189194 WormBaseID:WBGene00000166 Length:588 Species:Caenorhabditis elegans


Alignment Length:504 Identity:112/504 - (22%)
Similarity:197/504 - (39%) Gaps:123/504 - (24%)


- Green bases have known domain annotations that are detailed below.


  Fly    23 DELGVQMFCIVVKSNAQLVHK-------AQEMIVAKVRSTNVTEATRAISLLEECMTQCGDDFQD 80
            ||..::....:::|    ::|       |.::...|:.|.:..||...|..|:..:...|:...:
 Worm    23 DEERIKALDFIIES----IYKQPASALLAVDLFSHKLSSPSQEEAMLTIRALDYLVRNGGEKVHE 83

  Fly    81 EASKFRFLNELIRLVSKKYKGAETPHEVKQRIMECLLLWTTEFPQRQKIRDAYDMLRKE----GD 141
            ...:::|||||:||::.||.|..|...:|..|::.|.:|........|.:..|:.|:..    .|
 Worm    84 RCGRYKFLNELVRLIAPKYNGKLTSDALKTEIIKLLFIWQLSIKHIPKYKQVYESLKLSKIITDD 148

  Fly   142 IEHGTTEAAV----AKRESVLGTIDEAMFAK-LIKSNNPENFKRANLLLQYRMAQE--------A 193
            .....||..|    ..|.||....::|:..| |:.||.||:.:.||.|::..:..|        .
 Worm   149 PHVRETEVPVFAVPPVRSSVFDNEEQAVLLKALLSSNRPEDLETANNLIKTLVETEEHKLVKIHE 213

  Fly   194 RRNDLLAQHRLVLCEVQETMQLLNQM----LDTYDPAN----QDVSETLHELYKSCKKHKPIFQH 250
            ||..|  .|.:.||...|.::|....    |..|.|.|    |.|:..|.:|      .:..:.:
 Worm   214 RRKKL--DHAINLCNQVEHLRLDKAAETIGLGNYSPDNELTLQRVTNELIQL------QELFYGY 270

  Fly   251 LPQLLDDSDAQLVADTLDANCALLATMQRYKLLVPSPT-----RSTAAALTTSAPTVASSVKSTA 310
            :.:|.:::|..| .:.|:.|      .|..::|..:.|     |:..:|.|...|          
 Worm   271 VNELAENNDPCL-EEVLNIN------DQINRVLPENETPKCGNRAPISARTQLDP---------- 318

  Fly   311 SSTTATTSSNNAQLLNELLGDLLIDGSNKAATTATTSLPNAAASGSNPLADLSDIFSSAL---AE 372
                     .|.:||              ...|.|:.:|     ..|...|..|:..|.|   .|
 Worm   319 ---------ENQELL--------------VFNTPTSEVP-----PKNGFCDPRDLEGSLLNNMIE 355

  Fly   373 SEAKQQSQ--PFQNATTLLEPQVISQGTTTEALANGNGG-------SASKVPETIRK------MP 422
            ||..::.:  |.|..|     .|:::.::....|:|:..       :..::||.::.      .|
 Worm   356 SEFVEEPKIVPVQQMT-----PVLNRNSSASPRASGDSSIFETDFLAGKRLPEPLKPPTLNELKP 415

  Fly   423 QIDMLSEELFQQILPTQDRMP---SFKRDPEKITLND---LARERMHIK 465
            ....::.|..:.::|.....|   |.|..|||:.||.   :.|.|:.|:
 Worm   416 NTTTITLEALEVLVPPMSPEPTSLSPKAIPEKVALNPSSIIMRNRVPIE 464

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
GgaNP_572571.1 VHS_GGA 7..144 CDD:239624 31/131 (24%)
GAT 210..284 CDD:281166 16/81 (20%)
Alpha_adaptinC2 543..644 CDD:197886
apt-9NP_509853.2 VHS_ENTH_ANTH 8..147 CDD:295355 30/127 (24%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 1 1.000 54 1.000 Domainoid score I7546
eggNOG 1 0.900 - - E1_KOG1086
Hieranoid 1 1.000 - -
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D376337at33208
OrthoFinder 1 1.000 - - FOG0001639
OrthoInspector 1 1.000 - - oto19763
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - LDO PTHR45905
Phylome 00.000 Not matched by this tool.
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R2130
SonicParanoid 1 1.000 - - X1248
SwiftOrtho 1 1.000 - -
TreeFam 1 0.960 - -
1111.000

Return to query results.
Submit another query.