DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Gga and tom1l2

DIOPT Version :9

Sequence 1:NP_572571.1 Gene:Gga / 31902 FlyBaseID:FBgn0030141 Length:660 Species:Drosophila melanogaster
Sequence 2:XP_009298168.1 Gene:tom1l2 / 100535615 -ID:- Length:551 Species:Danio rerio


Alignment Length:596 Identity:110/596 - (18%)
Similarity:212/596 - (35%) Gaps:188/596 - (31%)


- Green bases have known domain annotations that are detailed below.


  Fly    10 EMLERATNPAQKIDELGVQM-FCIVVKSNAQLVHKAQEMIVAKVR-STNVTEATRAISLLEECMT 72
            :.:|:||:.:.:.::..:.| .|.::....:....|...:..::. :.|..|...|:::||.|:.
Zfish    15 QCIEKATDGSLQNEDWTLNMEICDIINETEEGPRDAMRAVKKRLNGNRNFREVMLALTVLETCVK 79

  Fly    73 QCGDDFQDEASKFRFL-NELIRLVSKKYKGAETPHEVKQ-RIMECLLLWTTEF---PQRQKIRDA 132
            .||..|....:...|: ..:::::|.|    ..|..:.| :::..:..|...|   |....:...
Zfish    80 NCGHRFHVHVANRDFIEGVMVKIISPK----NNPPAIAQDKVLALIQAWADAFRSSPDLTGVVHI 140

  Fly   133 YDMLRKEG----------------------DIEHGT-----------------TEAAVAKR---- 154
            |:.|:::|                      :::.||                 ..||.|..    
Zfish   141 YEELKRKGVEFPMADLDALSPIHTPQRGVPEVDPGTHRYKAPAQTHTAPERSPKPAAAAAPVFNN 205

  Fly   155 ---ESVLGTIDEAMFAKLIKSNNPENFKRANLLLQYRMAQEARRNDLLAQHRLVLCEVQETMQLL 216
               ::..|.|          |.|||.                     :|:.|..|..|:..::::
Zfish   206 THIQTAAGPI----------SANPEQ---------------------IARLRSELDIVRGNIKVM 239

  Fly   217 NQMLDTYDPANQDVS--ETLHELYKSCKKHKPIFQH-LPQLLDD-SDAQLVADTLDANCALLATM 277
            ::||....|..:|.|  |.|.||.::|:    ..|| :.:|:.. |:.::..:.|.||..|....
Zfish   240 SEMLTEMVPGQEDASDLELLQELNRTCR----AMQHRIVELISRVSNEEVTEELLHANDDLNNMF 300

  Fly   278 QRY------------------KLLVPSPTRSTAAALTTSAPTVASSVKSTASSTT---------- 314
            .||                  ::|..:........|...:|.|.:...||..:.|          
Zfish   301 LRYERYERYRVGRAAQNNGLREVLNEASEEDNLIDLGPGSPAVVTPRISTTPTHTHTHTHMQTPP 365

  Fly   315 -ATTSSNNAQLLNELLGDLLIDGSNKAATTATTSLPNAAASGSNPLADLSDIF----SSALAES- 373
             |..:::.|.|..:|.|   :|..:.:.:...:||.|     .||..|. |:|    ||:|||. 
Zfish   366 AAPAAADTASLSTQLAG---LDVRSDSVSGTLSSLAN-----HNPQDDF-DMFAHTRSSSLAEQR 421

  Fly   374 ------------------EAKQQSQPFQN---ATTLLEP---QVISQGTTTEALANGNGGSASKV 414
                              :.:||:....|   |...|||   .:::||....        |.|.|
Zfish   422 RNVKYEDPQALVGLASALDIRQQNATGPNVKGANAELEPIDSWLMTQGMIPV--------SQSSV 478

  Fly   415 PETIRKMPQIDMLSEELFQQILPTQDRMPSFKRDPEKITLNDLARERMHIKAPEEPTTANDPASD 479
            .:.|.:....|:..||..:.:  :.:....|..|              ..||.::.:....| .|
Zfish   479 MDDIEEWLCADVKGEEPEEGV--SSEEFDKFLED--------------RAKAADQVSPLGSP-GD 526

  Fly   480 SAPAIATATAT 490
            ..|.:::::::
Zfish   527 PRPPVSSSSSS 537

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
GgaNP_572571.1 VHS_GGA 7..144 CDD:239624 26/162 (16%)
GAT 210..284 CDD:281166 20/95 (21%)
Alpha_adaptinC2 543..644 CDD:197886
tom1l2XP_009298168.1 VHS_Tom1 12..152 CDD:239623 26/140 (19%)
GAT_SF 219..310 CDD:296121 26/115 (23%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C170574139
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R2130
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
21.960

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