DRSC/TRiP Functional Genomics Resources

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Protein Alignment Gga and tom1l1

DIOPT Version :9

Sequence 1:NP_572571.1 Gene:Gga / 31902 FlyBaseID:FBgn0030141 Length:660 Species:Drosophila melanogaster
Sequence 2:NP_001192093.1 Gene:tom1l1 / 100170155 XenbaseID:XB-GENE-494135 Length:477 Species:Xenopus tropicalis


Alignment Length:440 Identity:93/440 - (21%)
Similarity:159/440 - (36%) Gaps:87/440 - (19%)


- Green bases have known domain annotations that are detailed below.


  Fly    31 CIVVKSNAQLVHKAQEMIVAKV-RSTNVTEATRAISLLEECMTQCGDDFQDEASKFRFLNE-LIR 93
            |.|:.:.|.....|.:....:: |:.|..|...::.|||.||..|...|.....|..|..: |::
 Frog    39 CDVINTTADGPKDAVKAFRKRICRNYNQKEVKFSLLLLEMCMQNCVPTFHSLVLKKDFSKDVLVK 103

  Fly    94 LVSKKYKGAETPHEVKQRIMECLLLWTTEFPQ----RQKIRDAYDMLRKEGD-----IEHG-TTE 148
            :::.||   ..|..::.:|:..::.|:.: |:    ..:||:.|..|.|.|.     .|:| ..|
 Frog   104 MLNPKY---NLPVSLQNKILFLIMTWSHD-PKWKINATEIREVYLELIKRGIKFPSLQENGEMLE 164

  Fly   149 AAVAKRESVLGTIDEAMFAKLIKSNNPENFKR---------------ANLLLQYRM-AQEARRND 197
            ...:.::|:...:.......| .:..||...:               :.:||:.|: |:.....|
 Frog   165 TQESPKQSIQSPLSHHSKTDL-HNLTPEQIGKLYSEMDMVRMNVKVMSEILLETRLGAENPEDMD 228

  Fly   198 LLAQHRLVLCEVQETMQLLNQMLDTYD------PANQDVSETL--HELYKSCKKHKPIFQHLPQL 254
            ||.:......|:|..:..|.:.:...|      ..|.|::...  ||.:...|.::.. :|..| 
 Frog   229 LLEELHKACLEMQRRILTLVETVQNEDVIIELVQVNDDLNNVFLRHERFSRAKANQSA-EHRRQ- 291

  Fly   255 LDDSDAQLVADTLDANCALLATMQRYKLLVPS----PTRSTAAALTTSAPTVASSVKSTASSTTA 315
                 |:::  |.|.|.......:...|.|||    |..|....|  .|||:......|.:....
 Frog   292 -----AEIM--TFDDNGPTAPLSELIDLNVPSGPVHPVHSNGFLL--PAPTMPMHPWPTHTPHFP 347

  Fly   316 TTSSNNAQLLNE---LLGDLLIDGSNKAATT----------------------ATTSLPNAAASG 355
            ..|.    |.|.   |...:.:.|..:|..|                      ..|.||...|..
 Frog   348 DKSG----LENRVPFLYPQMDLQGLREAVDTRFELGVQLPEVPPQNIYDNTPAEPTLLPTVPALS 408

  Fly   356 SNPLADLSDIFSSALAE--SEAKQQSQPFQNATTLLEPQVISQGTTTEAL 403
            ...|...::..|..|||  |.|.:.:....|...|||...:::...||.:
 Frog   409 PTVLLIPNNPTSKQLAENKSGASENNSLLPNYYELLEFDPLAESNRTEVI 458

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
GgaNP_572571.1 VHS_GGA 7..144 CDD:239624 29/123 (24%)
GAT 210..284 CDD:281166 15/81 (19%)
Alpha_adaptinC2 543..644 CDD:197886
tom1l1NP_001192093.1 VHS_ENTH_ANTH 14..154 CDD:295355 29/118 (25%)
GAT_SF 190..281 CDD:296121 17/90 (19%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D594067at2759
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
21.920

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