DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment CG31875 and RCOR1

DIOPT Version :9

Sequence 1:NP_001188765.1 Gene:CG31875 / 318996 FlyBaseID:FBgn0051875 Length:161 Species:Drosophila melanogaster
Sequence 2:NP_055971.2 Gene:RCOR1 / 23186 HGNCID:17441 Length:485 Species:Homo sapiens


Alignment Length:144 Identity:37/144 - (25%)
Similarity:67/144 - (46%) Gaps:9/144 - (6%)


- Green bases have known domain annotations that are detailed below.


  Fly    18 ATLPDFVPPWKREQDLQQLQHRASILWSPQLQDQDDKAVREYLDYAASLYDIEEEQALFILRRHG 82
            |.:||| .|.|..:..|:..:...::|||. |:..:..:.||:..|...:....||||.:|..|.
Human   113 AVVPDF-DPAKLARRSQERDNLGMLVWSPN-QNLSEAKLDEYIAIAKEKHGYNMEQALGMLFWHK 175

  Fly    83 YDLPLAHRRLEKTETARGCRYHRWKAEDLIRLTKAFEQYGTDFAKVRKELPHFPLAEL-RLYFSF 146
            :::..:...|.......    ..|..||.:...:||..:|..|.::::.||...:|.| :.|:|:
Human   176 HNIEKSLADLPNFTPFP----DEWTVEDKVLFEQAFSFHGKTFHRIQQMLPDKSIASLVKFYYSW 236

  Fly   147 MSSALETD--DQQA 158
            ..:..:|.  |:.|
Human   237 KKTRTKTSVMDRHA 250

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG31875NP_001188765.1 ELM2 18..63 CDD:279754 13/44 (30%)
RCOR1NP_055971.2 Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 1..26
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 49..110
Interaction with HDAC1. /evidence=ECO:0000269|PubMed:11516394 78..257 37/144 (26%)
ELM2 105..158 CDD:307553 14/46 (30%)
SANT 194..238 CDD:328756 13/43 (30%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 244..314 2/7 (29%)
Interaction with KDM1A. /evidence=ECO:0000269|PubMed:16885027 296..384
Myb_DNA-binding 385..428 CDD:306708
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 442..485
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG1194
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 1 0.950 - 0 Normalized mean entropy S5681
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 1 1.000 - - FOG0001182
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
User_Submission 00.000 Not matched by this tool.
43.760

Return to query results.
Submit another query.