DRSC/TRiP Functional Genomics Resources

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Protein Alignment Fum4 and FUM1

DIOPT Version :9

Sequence 1:NP_723527.1 Gene:Fum4 / 318995 FlyBaseID:FBgn0051874 Length:484 Species:Drosophila melanogaster
Sequence 2:NP_015061.1 Gene:FUM1 / 855866 SGDID:S000006183 Length:488 Species:Saccharomyces cerevisiae


Alignment Length:475 Identity:243/475 - (51%)
Similarity:330/475 - (69%) Gaps:6/475 - (1%)


- Green bases have known domain annotations that are detailed below.


  Fly    13 YKL-ARLIVPDTRVEYDSMGAVHIPLDRMFGPQTMRSLMKFPIGGVEERMPRPLIKALGIVKKSA 76
            ||| .|.:....|.|.|:.|.:|:|.|:.:|.||.||...|.|||..||||.||:.|.|::||||
Yeast    17 YKLNIRRMNSSFRTETDAFGEIHVPADKYWGAQTQRSFQNFKIGGARERMPLPLVHAFGVLKKSA 81

  Fly    77 AETNK-IHCLEEHLCDAISKACDDVISGKLYDEEHFPLVIWQDGSGEHTNMNVNEVICNRAIEIL 140
            |..|: :..|:..:..||.:|.|:|.||||  ::|||||::|.|||..:|||.||||.|||||||
Yeast    82 AIVNESLGGLDPKISKAIQQAADEVASGKL--DDHFPLVVFQTGSGTQSNMNANEVISNRAIEIL 144

  Fly   141 GGQMGSKEPVDPNEHVNMAQSSHDTFSTAVRIAVAMQLQETLYPSLRTFIDLLGKKSNDWMDLIK 205
            ||::|||: |.||.|.|.:|||:|||.|.:.||.::|:|..|.|.|....:.|..||.::..::|
Yeast   145 GGKIGSKQ-VHPNNHCNQSQSSNDTFPTVMHIAASLQIQNELIPELTNLKNALEAKSKEFDHIVK 208

  Fly   206 IGRTHLMDAVPLSLGQEFSGYQQQLVNGRTRLDCAMCRLYQLPMGGTSVGTKVDTKAEYSAQCIK 270
            ||||||.||.||:||||||||.||:.||..|:..::..|..|..|||:|||.::||..:..:..:
Yeast   209 IGRTHLQDATPLTLGQEFSGYVQQVENGIQRVAHSLKTLSFLAQGGTAVGTGLNTKPGFDVKIAE 273

  Fly   271 RIAELTFLPFVESPNFFESISACDCLVELHGELNTIAASVMKIANDIRFLGSGPRCGFGELHLPE 335
            :|::.|.|.|..:||.||:::|.|.:||..|.|||:|.|:.|||.|||:||||||||:.||.|||
Yeast   274 QISKETGLKFQTAPNKFEALAAHDAIVECSGALNTLACSLFKIAQDIRYLGSGPRCGYHELMLPE 338

  Fly   336 NEPGSSIMPGKVNPTQCEAMSMICAQVMGNHVAVSMGGSSGHFQLNTFMPMIASNVLRSITLLGD 400
            ||||||||||||||||.||::.:|.|||||:.|::..||.|.|:||.|.|::.:|:|.||.|:.|
Yeast   339 NEPGSSIMPGKVNPTQNEALTQVCVQVMGNNAAITFAGSQGQFELNVFKPVMIANLLNSIRLITD 403

  Fly   401 GMKSFCTNCLEGIEPNRSKIGSIVKESLMLVTALSPHIGYERSAAIAKAAHHNGTTLEQEAILDG 465
            ...||..:|:|||:.|..:|..::.:||||||||:|.|||:.::.:||.||..|.||::.|:..|
Yeast   404 AAYSFRVHCVEGIKANEPRIHELLTKSLMLVTALNPKIGYDAASKVAKNAHKKGITLKESALELG 468

  Fly   466 IQRE-DFREWVQPSKMLGPE 484
            :..| :|.|||.|..||||:
Yeast   469 VLTEKEFDEWVVPEHMLGPK 488

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Fum4NP_723527.1 fumC 22..483 CDD:234779 237/462 (51%)
Fumarase_classII 24..480 CDD:176465 235/457 (51%)
FUM1NP_015061.1 fumC 26..488 CDD:234779 238/464 (51%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C157346590
Domainoid 1 1.000 77 1.000 Domainoid score I2084
eggNOG 1 0.900 - - E1_COG0114
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 1 0.950 - 0 Normalized mean entropy S145
OMA 1 1.010 - - QHG61095
OrthoFinder 1 1.000 - - FOG0002459
OrthoInspector 1 1.000 - - otm46567
orthoMCL 1 0.900 - - OOG6_101016
Panther 1 1.100 - - O PTHR11444
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 1 1.000 - - X1641
TreeFam 1 0.960 - -
1211.660

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