DRSC/TRiP Functional Genomics Resources

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Protein Alignment LPCAT and gpat3

DIOPT Version :9

Sequence 1:NP_001036265.1 Gene:LPCAT / 31899 FlyBaseID:FBgn0052699 Length:533 Species:Drosophila melanogaster
Sequence 2:NP_001002685.1 Gene:gpat3 / 436958 ZFINID:ZDB-GENE-040718-436 Length:449 Species:Danio rerio


Alignment Length:338 Identity:79/338 - (23%)
Similarity:148/338 - (43%) Gaps:51/338 - (15%)


- Green bases have known domain annotations that are detailed below.


  Fly    28 VAASLTKRDSEED--TW-----ASKGYNYINPFVHRIEIDSHIEVAKIYVLTVLLLPIRVVGCVL 85
            |...:|:|.|.|:  :|     .:..:.||:.   |:.|   |....::|...:|||:|:...|:
Zfish   117 VEDQVTQRFSSEELASWNLLTRTNNNFRYISV---RLTI---IWGLGVFVRYCVLLPLRITLAVI 175

  Fly    86 SLISAWMFACIGLYGMTLDDLKAKPLTGWRKQMQYMTACGMRMVYTFGSFHYVTMKGRAATAK-- 148
            .|  :|:.....|.|. |.:.|.|   .|...:.::|.            :.:..:|.:||.:  
Zfish   176 GL--SWLVIGTTLVGF-LPNSKVK---NWLSDLVHITC------------YRICARGLSATIRYH 222

  Fly   149 ------EAPILVVAPHSSYVDSILVVASGPPSIVAKRETADIPLLGKI----INYAQPIYVQRED 203
                  :...:.||.|:|.:|.:::...|..::|.:....   |:|.|    :.....::.:|.:
Zfish   223 NKENRPKKGGICVANHTSPIDIVILANDGCYAMVGQVHGG---LMGVIQRSMVRSCPHVWFERSE 284

  Fly   204 PNSRQNTIRDIVDRARSTDDWPQVVIFAEGTCTNRTALIKFKPGAFYPGVPVQPVLLKYPNKYDT 268
            ...|....:.:.|........| ::||.||||.|.|:::.||.|:|..|..:.||.:||..::..
Zfish   285 MKDRHAVAKRLKDHISDKTKLP-ILIFPEGTCINNTSVMMFKKGSFEFGGTIYPVAIKYDPRFGD 348

  Fly   269 FTWTWDGPGVLRLLWLTMTQFYNRCEIEYLPVYTPSEDEVADANLYANNVREVMAKALGVPTSDY 333
            ..|......::..:...||.:...|.:.|||..|..:.|  ||..:||.|:..:|...|:  .|.
Zfish   349 AFWNSAKYNMVSYILRMMTSWAIVCNVWYLPPMTQQDGE--DAVHFANRVKSAIAHQGGL--VDL 409

  Fly   334 SFEDVIVMSRARD 346
            |::..:..|:.::
Zfish   410 SWDGGLKRSKVKE 422

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
LPCATNP_001036265.1 PlsC 87..>265 CDD:223282 43/189 (23%)
LPLAT_LPCAT1-like 126..338 CDD:153253 52/223 (23%)
EF-hand_8 455..507 CDD:290545
gpat3NP_001002685.1 LPLAT_LPCAT1-like 208..417 CDD:153253 52/216 (24%)
HXXXXD motif. /evidence=ECO:0000250|UniProtKB:Q9D517 238..243 2/4 (50%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG0204
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
21.810

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