DRSC/TRiP Functional Genomics Resources

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Protein Alignment LPCAT and Gpat3

DIOPT Version :9

Sequence 1:NP_001036265.1 Gene:LPCAT / 31899 FlyBaseID:FBgn0052699 Length:533 Species:Drosophila melanogaster
Sequence 2:NP_001020841.1 Gene:Gpat3 / 305166 RGDID:1565703 Length:457 Species:Rattus norvegicus


Alignment Length:314 Identity:78/314 - (24%)
Similarity:141/314 - (44%) Gaps:47/314 - (14%)


- Green bases have known domain annotations that are detailed below.


  Fly    28 VAASLTKRDSEED--TW-----ASKGYNYINPFVHRIEIDSHIEVAKIYVLTVL-----LLPIRV 80
            |...:|:|.|.|:  :|     .:..::||:|           ::..::||.||     |||:||
  Rat   108 VEDEVTQRFSSEELVSWNLLTRTNVNFHYISP-----------KLTIVWVLGVLVRYCFLLPLRV 161

  Fly    81 ----VGCVLSLISAWMFACIGLYGMTL-DDLKAKPLTGWRKQMQYMTACGMRMVYTFGSFHYVTM 140
                :|..|.:|           |.|| ..|....|..|..::.::|.|.:.:....|:.||...
  Rat   162 TLAFIGISLLII-----------GTTLVGQLPDSSLKNWLSELVHLTCCRICVRSLSGTIHYHNK 215

  Fly   141 KGRAATAKEAPILVVAPHSSYVDSILVVASGPPSIVAKRETADIPLLGKIINYAQP-IYVQREDP 204
            :.|.....    :.||.|:|.:|.:::...|..::|.:.....:.::.:.:..|.| ::.:|.:.
  Rat   216 QYRPQKGG----ICVANHTSPIDVLILATDGCYAMVGQVHGGLMGIIQRAMVKACPHVWFERSEI 276

  Fly   205 NSRQNTIRDIVDRARSTDDWPQVVIFAEGTCTNRTALIKFKPGAFYPGVPVQPVLLKYPNKYDTF 269
            ..|....:.:.:........| ::||.||||.|.|:::.||.|:|..|..:.||.:||..::...
  Rat   277 KDRHLVTKRLKEHIADKKKLP-ILIFPEGTCINNTSVMMFKKGSFEIGGTIYPVAIKYNPQFGDA 340

  Fly   270 TWTWDGPGVLRLLWLTMTQFYNRCEIEYLPVYTPSEDEVADANLYANNVREVMA 323
            .|......::..|...||.:...|::.|:|..|..|.|  ||..:||.|:..:|
  Rat   341 FWNSSKYNLVSYLLRIMTSWAIVCDVWYMPPMTREEGE--DAVQFANRVKSAIA 392

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
LPCATNP_001036265.1 PlsC 87..>265 CDD:223282 42/179 (23%)
LPLAT_LPCAT1-like 126..338 CDD:153253 49/199 (25%)
EF-hand_8 455..507 CDD:290545
Gpat3NP_001020841.1 LPLAT_LPCAT1-like 199..408 CDD:153253 50/201 (25%)
HXXXXD motif. /evidence=ECO:0000250|UniProtKB:Q9D517 229..234 2/4 (50%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 429..457
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG0204
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
21.810

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