DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment LPCAT and bus-18

DIOPT Version :9

Sequence 1:NP_001036265.1 Gene:LPCAT / 31899 FlyBaseID:FBgn0052699 Length:533 Species:Drosophila melanogaster
Sequence 2:NP_505971.2 Gene:bus-18 / 186277 WormBaseID:WBGene00044631 Length:391 Species:Caenorhabditis elegans


Alignment Length:286 Identity:64/286 - (22%)
Similarity:109/286 - (38%) Gaps:61/286 - (21%)


- Green bases have known domain annotations that are detailed below.


  Fly    81 VGCVLSLISAWMFA-CI------GLYGMTLDDLKAKPLTG----WRKQMQYMTACGMRMVYTFGS 134
            :.|:|..:..|.|. ||      |.|.:||  ....|:.|    ||..|.  .|....|....|.
 Worm     3 IPCLLRPLLGWFFGLCILFSALFGNYIITL--FLGLPILGRHKQWRNLMD--RAISYWMTIPMGL 63

  Fly   135 FHYVTMKGRAATAKE-----APILVVAPHSSYVDSI------------LVVASGPPSIVAKRETA 182
            ..:: |..|...:.:     :|.::|..|.:.:|.:            |:.::   .|..|.:..
 Worm    64 LEFL-MGVRIRVSGDEIEFGSPAMIVMNHRTRLDWMYMWCALYQINPWLITSN---KISLKAQLK 124

  Fly   183 DIPLLGKIINYAQPIYVQREDPNSRQNTIRDIVDRARSTDDWPQVVIFAEGTCTNRTALIKFKPG 247
            .:|..|..:..||.::::| :....:.:..|.:|..::.|...|:::|.|||..:....:|.:..
 Worm   125 KLPGAGFGMAAAQFVFLER-NAEVDKRSFDDAIDYFKNIDKKYQILLFPEGTDKSEWTTLKSREF 188

  Fly   248 AFYPGVPVQPVLLKYPNKYDTFTWTWDGPGVLRLLWLTMTQFYNRCEIEYL-------PVYTPSE 305
            |...|:.....:| ||..          .|.|.||.....|.|    :||:       | |...:
 Worm   189 AKKNGLRHLDYVL-YPRT----------TGFLHLLNKMREQEY----VEYIYDITIAYP-YNIVQ 237

  Fly   306 DEVADANLYANNVREVMAKALGVPTS 331
            .|: |..|...:.|||......:|.|
 Worm   238 SEI-DLVLKGASPREVHFHIRKIPIS 262

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
LPCATNP_001036265.1 PlsC 87..>265 CDD:223282 44/205 (21%)
LPLAT_LPCAT1-like 126..338 CDD:153253 48/230 (21%)
EF-hand_8 455..507 CDD:290545
bus-18NP_505971.2 LPLAT_LCLAT1-like 63..257 CDD:153252 44/215 (20%)
Acyltransf_C 249..329 CDD:374349 5/14 (36%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG0204
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.900

Return to query results.
Submit another query.