DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment LPCAT and acl-1

DIOPT Version :9

Sequence 1:NP_001036265.1 Gene:LPCAT / 31899 FlyBaseID:FBgn0052699 Length:533 Species:Drosophila melanogaster
Sequence 2:NP_510606.1 Gene:acl-1 / 181671 WormBaseID:WBGene00010339 Length:262 Species:Caenorhabditis elegans


Alignment Length:289 Identity:59/289 - (20%)
Similarity:105/289 - (36%) Gaps:66/289 - (22%)


- Green bases have known domain annotations that are detailed below.


  Fly    65 VAKIYVLTVLLL--PIRVVGCVLSLISAWMFACIG--LYGMTLDDLKAKPLTGWR--KQMQYMT- 122
            :|.::|:.||||  .:.|:|..:..:...|...||  |.|:........|...:|  |..|.|| 
 Worm     4 LAILFVIAVLLLLAQLPVIGFYIRAVYFGMCLIIGGFLGGLASIPFGKSPNNHFRMFKIFQAMTW 68

  Fly   123 ACGMRMVYTFGSFHYVTMKGRAATAKEAPILVVAPHSSYVDSILVVASGPPS--IVAKRETADIP 185
            ..|:|.          .::.......:.|.:::|.|.|.:|.:.:..:.|..  ::.|.....:|
 Worm    69 PMGVRF----------ELRNSEILHDKKPYIIIANHQSALDVLGMSFAWPVDCVVMLKSSLKYLP 123

  Fly   186 LLGKIINYAQPIYVQREDPNSR----QNTIRDIVDRARSTDDWPQVVIFAEGTCTNRTALIKFKP 246
            ...........:|:.|......    ..|:.:||.:.|      :|.|:.|||......|:.||.
 Worm   124 GFNLCAYLCDSVYINRFSKEKALKTVDTTLHEIVTKKR------KVWIYPEGTRNAEPELLPFKK 182

  Fly   247 GAF----YPGVPVQPVLLKYPNKYDTFTWTWDGPGVLRLLWLTMTQFYN---------RCEIEYL 298
            |||    ...:|:.|.:.. .:|:                      ||:         .|.|:.|
 Worm   183 GAFILAKQAKIPIVPCVFS-SHKF----------------------FYSHAEKRLTSGNCIIDIL 224

  Fly   299 PVYTPSE-DEVADANLYANNVREVMAKAL 326
            |....|: |.:.|.:.:...:.:...:.|
 Worm   225 PEVDSSKFDSIDDLSAHCRKIMQAHREKL 253

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
LPCATNP_001036265.1 PlsC 87..>265 CDD:223282 40/192 (21%)
LPLAT_LPCAT1-like 126..338 CDD:153253 39/221 (18%)
EF-hand_8 455..507 CDD:290545
acl-1NP_510606.1 PlsC 26..>199 CDD:223282 40/188 (21%)
LPLAT_AGPAT-like 65..243 CDD:153251 41/216 (19%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG0204
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
21.810

Return to query results.
Submit another query.