DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment LPCAT and acl-8

DIOPT Version :9

Sequence 1:NP_001036265.1 Gene:LPCAT / 31899 FlyBaseID:FBgn0052699 Length:533 Species:Drosophila melanogaster
Sequence 2:NP_001348648.1 Gene:acl-8 / 179031 WormBaseID:WBGene00020264 Length:372 Species:Caenorhabditis elegans


Alignment Length:142 Identity:29/142 - (20%)
Similarity:51/142 - (35%) Gaps:32/142 - (22%)


- Green bases have known domain annotations that are detailed below.


  Fly   114 WRKQMQYMTACGMRMV------------YTFGSFHYVTMKGRAATAKEAPILVVAPHSSYVDSIL 166
            ||       .|..|:|            :.||....||   .....::.|.:::..|.:.:|.:.
 Worm    39 WR-------TCADRLVGFWLTFPCSLIEWVFGVNFRVT---GDLIERDEPAILIMNHRTRLDWLF 93

  Fly   167 ----VVASGP-----PSIVAKRETADIPLLGKIINYAQPIYVQREDPNSRQNTIRDIVDRARSTD 222
                :....|     ..|..|.....||..|..::....|::.|...|.:. .:..||.....::
 Worm    94 SWNALYKMDPWLLTTEKISLKAPLKKIPGAGWAMSSGSYIFLDRNFENDKP-VLERIVKYYSGSE 157

  Fly   223 DWPQVVIFAEGT 234
            ...|:::|||||
 Worm   158 KKYQILLFAEGT 169

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
LPCATNP_001036265.1 PlsC 87..>265 CDD:223282 29/142 (20%)
LPLAT_LPCAT1-like 126..338 CDD:153253 26/130 (20%)
EF-hand_8 455..507 CDD:290545
acl-8NP_001348648.1 LPLAT_LCLAT1-like 55..250 CDD:153252 24/119 (20%)
Acyltransf_C 236..313 CDD:374349
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG0204
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.900

Return to query results.
Submit another query.