DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment LPCAT and lpcat2

DIOPT Version :9

Sequence 1:NP_001036265.1 Gene:LPCAT / 31899 FlyBaseID:FBgn0052699 Length:533 Species:Drosophila melanogaster
Sequence 2:XP_012815924.2 Gene:lpcat2 / 100124943 XenbaseID:XB-GENE-946438 Length:569 Species:Xenopus tropicalis


Alignment Length:485 Identity:182/485 - (37%)
Similarity:277/485 - (57%) Gaps:29/485 - (5%)


- Green bases have known domain annotations that are detailed below.


  Fly    51 NPFVHRIEIDSHIEVAKIYVLTVLLLPIRVVGCVLSLISAWMFACIGLYGMTLDDLKAKPLTGWR 115
            |||||.|.: |.:...|:.:..:.|||:||:..::.|:.:|:.|.|..  ....:...|||.|||
 Frog    58 NPFVHEINL-SPVNKLKMVLCGLFLLPLRVILFMIVLLVSWLVAAIAT--CCCPEKNEKPLEGWR 119

  Fly   116 KQMQYMTACGM--RMVYTFGSFHYVTMKGRAATAKEAPILVVAPHSSYVDSILVVASGPPSIVAK 178
            :::. .|..|.  |:::....|| |.::|:.||..:||||:||||||:.|:|.|:.||.||.|::
 Frog   120 RKVT-QTLIGSLGRLLFFSMGFH-VRVEGKPATPSDAPILLVAPHSSFFDAIAVIVSGMPSSVSR 182

  Fly   179 RETADIPLLGKIINYAQPIYVQREDPNSRQNTIRDIVDRARSTDDWPQVVIFAEGTCTNRTALIK 243
            .|...:|:.|:|:...||:.|.|.||:||:|||.:|..||.|..:||||:||.|||||||:.||.
 Frog   183 AENISVPIFGRILRALQPVLVSRVDPDSRKNTINEIKKRATSGGEWPQVLIFPEGTCTNRSCLIS 247

  Fly   244 FKPGAFYPGVPVQPVLLKYPNKYDTFTWTWDGPGVLRLLWLTMTQFYNRCEIEYLPVYTPSEDEV 308
            ||||||:|||||||:||:|||..||.||||.|..|.:||.||:.|......:|:||||.|||:|.
 Frog   248 FKPGAFHPGVPVQPILLRYPNIQDTVTWTWQGFSVEKLLLLTLCQICTNVTVEFLPVYVPSEEEK 312

  Fly   309 ADANLYANNVREVMAKALGVPTSDYSFEDVIVMSRARDMKIPFPGDIVEIERTIEKLGLNESQRD 373
            .|..|||:|||..||:|||:|.:|:::||..:|..|.::.:|....:||..:..:||.|......
 Frog   313 KDPFLYAHNVRHTMAQALGLPVTDHTYEDCRLMMTAGELTLPMETGLVEFTKISKKLNLKWDSIK 377

  Fly   374 AEL---------CKGFLRLSNTDRLDIITFGELLQVDLKNTDLHKLFALLDHRRSGTVSLKSFLL 429
            .:|         |||       .|:.|..|...|::.:.:. |.:||:|.|..:.||:..:.:::
 Frog   378 KQLEVFASIAGSCKG-------GRIGIEEFANHLKLPVSDV-LRELFSLFDRNKDGTIDFREYVI 434

  Fly   430 -CSLFCKLKNSDLLTFLRALIHLYS-ESSQQIDRESFVRLMRHAGGKLNEQKAQALFYALDTDNL 492
             .::.|...|::  ..::....|:. :....|..:.|..|::.:.| :.:.....||..:|.||.
 Frog   435 GVAILCNPANTE--ETIKMAFKLFDVDEDGSITEDEFSSLLQSSLG-VPDLDVSKLFRDMDADNS 496

  Fly   493 GYVSFDSFVELTEKQKSSYKFLYHKSEHIR 522
            |.:|::.|...:.......|......||.|
 Frog   497 GKISYEEFRNFSLNHPEYAKLFTTYLEHQR 526

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
LPCATNP_001036265.1 PlsC 87..>265 CDD:223282 88/179 (49%)
LPLAT_LPCAT1-like 126..338 CDD:153253 114/213 (54%)
EF-hand_8 455..507 CDD:290545 12/51 (24%)
lpcat2XP_012815924.2 LPLAT_LPCAT1-like 132..343 CDD:153253 115/211 (55%)
FRQ1 359..509 CDD:227455 35/160 (22%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 1 1.000 150 1.000 Domainoid score I4356
eggNOG 00.000 Not matched by this tool.
Hieranoid 1 1.000 - -
Homologene 00.000 Not matched by this tool.
Inparanoid 1 1.050 346 1.000 Inparanoid score I2263
OMA 1 1.010 - - QHG58407
OrthoDB 1 1.010 - - D1266853at2759
OrthoFinder 1 1.000 - - FOG0001365
OrthoInspector 1 1.000 - - otm48239
Panther 1 1.100 - - LDO PTHR23063
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 1 1.000 - - X772
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
1010.080

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