DRSC/TRiP Functional Genomics Resources

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Protein Alignment RpS28b and RPS28A

DIOPT Version :9

Sequence 1:NP_001285059.1 Gene:RpS28b / 31897 FlyBaseID:FBgn0030136 Length:65 Species:Drosophila melanogaster
Sequence 2:NP_014810.1 Gene:RPS28A / 854338 SGDID:S000005693 Length:67 Species:Saccharomyces cerevisiae


Alignment Length:67 Identity:47/67 - (70%)
Similarity:55/67 - (82%) Gaps:2/67 - (2%)


- Green bases have known domain annotations that are detailed below.


  Fly     1 MDK--PVVWARVMKVLGRTGSQGQCTQVKVEFLGEQNRQIIRNVKGPVREGDILTLLESEREARR 63
            ||.  ||..|:|:||||||||:|..|||:||||.:.:|.|:|||||||||.|||.|:||||||||
Yeast     1 MDNKTPVTLAKVIKVLGRTGSRGGVTQVRVEFLEDTSRTIVRNVKGPVRENDILVLMESEREARR 65

  Fly    64 LR 65
            ||
Yeast    66 LR 67

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
RpS28bNP_001285059.1 S1_S28E 8..65 CDD:239904 41/56 (73%)
RPS28ANP_014810.1 S1_S28E 8..67 CDD:239904 41/58 (71%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C157346712
Domainoid 1 1.000 89 1.000 Domainoid score I1789
eggNOG 1 0.900 - - E1_COG2053
Hieranoid 1 1.000 - -
Homologene 1 1.000 - - H68150
Inparanoid 1 1.050 91 1.000 Inparanoid score I1533
Isobase 00.000 Not matched by this tool.
OMA 1 1.010 - - QHG53935
OrthoFinder 1 1.000 - - FOG0002156
OrthoInspector 1 1.000 - - mtm9227
orthoMCL 1 0.900 - - OOG6_101185
Panther 1 1.100 - - O PTHR10769
Phylome 1 0.910 - -
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R1243
SonicParanoid 1 1.000 - - X1439
TreeFam 1 0.960 - -
1514.790

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