DRSC/TRiP Functional Genomics Resources

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Protein Alignment RpS28b and rps2801

DIOPT Version :9

Sequence 1:NP_001285059.1 Gene:RpS28b / 31897 FlyBaseID:FBgn0030136 Length:65 Species:Drosophila melanogaster
Sequence 2:NP_594526.1 Gene:rps2801 / 2542751 PomBaseID:SPAC25G10.06 Length:68 Species:Schizosaccharomyces pombe


Alignment Length:62 Identity:46/62 - (74%)
Similarity:53/62 - (85%) Gaps:0/62 - (0%)


- Green bases have known domain annotations that are detailed below.


  Fly     4 PVVWARVMKVLGRTGSQGQCTQVKVEFLGEQNRQIIRNVKGPVREGDILTLLESEREARRLR 65
            ||..|:|:||||||||:|..|||:|||:.:.:|.|||||||||||.|||.||||||||||||
pombe     7 PVKLAKVIKVLGRTGSRGGVTQVRVEFMDDTSRSIIRNVKGPVREDDILVLLESEREARRLR 68

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
RpS28bNP_001285059.1 S1_S28E 8..65 CDD:239904 42/56 (75%)
rps2801NP_594526.1 S1_S28E 9..68 CDD:239904 42/58 (72%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Domainoid 1 1.000 89 1.000 Domainoid score I2090
eggNOG 1 0.900 - - E1_COG2053
Hieranoid 1 1.000 - -
Homologene 1 1.000 - - H68150
Inparanoid 1 1.050 91 1.000 Inparanoid score I1742
OMA 1 1.010 - - QHG53935
OrthoFinder 1 1.000 - - FOG0002156
OrthoInspector 1 1.000 - - mtm9302
orthoMCL 1 0.900 - - OOG6_101185
Panther 1 1.100 - - LDO PTHR10769
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 1 1.000 - - X1439
TreeFam 1 0.960 - -
1312.830

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