DRSC/TRiP Functional Genomics Resources

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Protein Alignment DIP-kappa and dscama

DIOPT Version :9

Sequence 1:NP_723828.1 Gene:DIP-kappa / 318958 FlyBaseID:FBgn0051814 Length:672 Species:Drosophila melanogaster
Sequence 2:XP_021334866.1 Gene:dscama / 568643 ZFINID:ZDB-GENE-050310-7 Length:2025 Species:Danio rerio


Alignment Length:594 Identity:130/594 - (21%)
Similarity:203/594 - (34%) Gaps:139/594 - (23%)


- Green bases have known domain annotations that are detailed below.


  Fly    24 FNVRQLAITIIATAAVTMLMTATPTLAEIPSKGK---HTRLDTQ----QTAQEDSDFPRFAEPIA 81
            ||.||.|.....|   ..|:.....|.|    |:   |.::..|    |:.......|.|.:|..
Zfish   547 FNDRQRAFENNGT---LKLLNVQKELDE----GEYSCHVQVQPQLFKNQSVHVTVKVPPFIQPFE 604

  Fly    82 NVTVSVGRDALMACVVENLKG---YKVAWVRVDTQTILSIHHNVISQNSRISLTYN--DHRSWYL 141
            ....|:|....:.|||.:  |   ..:.|.: |.::|          |:.:.:|.:  |..| .|
Zfish   605 FPRYSIGHRVFVPCVVRS--GDLPISITWEK-DGKSI----------NASLGVTIDNIDFTS-SL 655

  Fly   142 HIKEVEETDRGWYMCQVNTD-PMRSRKGYLQVVVPPIIVEGLTSNDMVVREGQNISLVCKARGYP 205
            .|..::....|.|.|....| .:...:..|.|.|||.........|.:.  |:::.|.|.|.|.|
Zfish   656 RISNLQRVHNGTYTCIAQNDAAVVKYQSQLIVRVPPRFKVQPQDQDGIY--GKSVILNCSADGEP 718

  Fly   206 EPYVMWRREDGEEM-------LIGGEHVNVVDGELLHITKVSRLHMAAYLCVASNGVPPSISKRV 263
            .|.:.|:...|..:       |..|..|.::....|.|..|.......|||..||.|...:||.:
Zfish   719 RPTIEWKYSKGAGVPQFQPIALNSGFRVQLLGNGSLLIKHVLEEDAGYYLCKVSNDVGADVSKSM 783

  Fly   264 HLRVQFPPML-SIPNQLEGAYLGQDVILECHTEAYPASINYWTTE-----RGDMIISDTSR---- 318
            :|.|:.|.|: |.||. ..|..|:.:.:.|........:..|..|     :..||..|..|    
Zfish   784 YLNVKIPAMITSYPNN-SLATKGEKIEMSCKAHGEKPIMVRWEKEVEKEKQSHMINPDMWRHTVT 847

  Fly   319 ---AGDKYETTSTVSGYTKYMKLKIRAVGPNDFGTYRCVAKNSLGETDGNIKL--DEMPTPTTAI 378
               .||  |..||         |:|......|.|.:.|.|.||.||..|.::|  .|.|.|....
Zfish   848 VKNVGD--EVVST---------LQIYPTMREDSGFFSCHAINSYGEDRGILQLTVQEPPEPPKVE 901

  Fly   379 ISEMSLLNRSYDGKRRHRNKFDSANALPDYGVEEWRDGAQGNNAGNNGD-----NNQTPVRNPPG 438
            |.|:.  .|:.  ..|....||..:.:..|.:|..........|....|     |..|.:...|.
Zfish   902 IREVK--ERTI--ALRWTMGFDGNSLITGYDIECKNKTETWERARRTRDVSPTLNQATIIELHPS 962

  Fly   439 AFHNSAGSLAQHNLLAKIMLGIKTQSFGIFKRLSSSLPLAAGQSFLWLSTLSLVSAPSRWRMSNV 503
            :.:|.       .:.||..:|                                            
Zfish   963 STYNI-------RMFAKNHIG-------------------------------------------- 976

  Fly   504 ENRPNSPETVVNNDTAAECWETRSHCVSESNNNNNSRITQRPPMWARHL-----RIFHIAHTPCG 563
            ::.|::..||..::...|  ........|:..:.:.::|.:.|:  :||     |.:.:.|....
Zfish   977 DSEPSNELTVTTDEADPE--GPPQDVTLEAITSQSIKVTWKAPL--KHLQNGVIRGYQVCHREHS 1037

  Fly   564 ASTQYQRLC 572
            .:..:|.:|
Zfish  1038 TNGSHQFVC 1046

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
DIP-kappaNP_723828.1 Ig 80..172 CDD:299845 20/97 (21%)
IG_like 82..174 CDD:214653 21/97 (22%)
IG_like 184..267 CDD:214653 25/89 (28%)
IGc2 191..255 CDD:197706 20/70 (29%)
IG_like 282..368 CDD:214653 25/97 (26%)
Ig 288..367 CDD:143165 23/90 (26%)
dscamaXP_021334866.1 Ig 124..217 CDD:325142
I-set 236..311 CDD:254352
IG_like 321..402 CDD:214653
I-set 408..502 CDD:333254
IGc2 524..579 CDD:197706 11/38 (29%)
Ig 614..679 CDD:319273 17/78 (22%)
Ig_DSCAM 708..787 CDD:143211 23/78 (29%)
Ig 805..898 CDD:325142 27/103 (26%)
FN3 894..988 CDD:238020 22/148 (15%)
FN3 995..1092 CDD:238020 9/54 (17%)
fn3 1100..1186 CDD:306538
fn3 1199..1282 CDD:306538
Ig 1312..1377 CDD:319273
fn3 1405..1471 CDD:306538
FN3 1492..1563 CDD:238020
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG3510
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
21.810

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