DRSC/TRiP Functional Genomics Resources

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Protein Alignment DIP-kappa and Dscam1

DIOPT Version :9

Sequence 1:NP_723828.1 Gene:DIP-kappa / 318958 FlyBaseID:FBgn0051814 Length:672 Species:Drosophila melanogaster
Sequence 2:NP_001246162.1 Gene:Dscam1 / 35652 FlyBaseID:FBgn0033159 Length:2038 Species:Drosophila melanogaster


Alignment Length:563 Identity:115/563 - (20%)
Similarity:187/563 - (33%) Gaps:165/563 - (29%)


- Green bases have known domain annotations that are detailed below.


  Fly    14 TRRRFRLQAEFNVRQLAITIIATAAVTMLMTATPTLAEIPSKGKHTRLDTQQTAQEDSDFPRFAE 78
            |.|:..:.....|:|::.|:|...||            :...||:..:.......|.      .|
  Fly   292 TTRKQAVVLNDRVKQVSGTLIIKDAV------------VEDSGKYLCVVNNSVGGES------VE 338

  Fly    79 PIANV-------------TVSVGRDALMACVVENLKGYKVAWVRVDTQTILSIHHNVISQNSRIS 130
            .:..|             ||..||.|:..|.........|:|:: |.:.|               
  Fly   339 TVLTVTAPLSAKIDPPTQTVDFGRPAVFTCQYTGNPIKTVSWMK-DGKAI--------------- 387

  Fly   131 LTYNDHRSWYLHIKEVEETDRGWYMCQVNTDPMRSRKGYLQVVV-----PPIIVEGLTSNDMVVR 190
                .|....|.|:.|::.|:|.|.|.|..| ..|.:...::.:     ||:|.:......|  .
  Fly   388 ----GHSEPVLRIESVKKEDKGMYQCFVRND-QESAEASAELKLGGRFDPPVIRQAFQEETM--E 445

  Fly   191 EGQNISLVCKARGYPEPYVMWRREDGEEMLIG-----GEHVNVVDGEL---LHITKVSRLHMAAY 247
            .|.::.|.|.|.|.|.|.:.|.. ||:::...     |::| .|:|::   |:||.|.......|
  Fly   446 PGPSVFLKCVAGGNPTPEISWEL-DGKKIANNDRYQVGQYV-TVNGDVVSYLNITSVHANDGGLY 508

  Fly   248 LCVASN--GVPPSISKRVHLRVQFPPMLSIPNQLE--GAYLGQDVILECHTEAYPASINYWTTE- 307
            .|:|.:  ||....:|   |.|...|.:   .|:|  ....|:.:|:.|....||.....|..: 
  Fly   509 KCIAKSKVGVAEHSAK---LNVYGLPYI---RQMEKKAIVAGETLIVTCPVAGYPIDSIVWERDN 567

  Fly   308 -------------RGDMIISDTSRAGDKYETTSTVSGYTKYMKLKIRAVGPNDFGTYRCVAKNSL 359
                         .|.:||.:..|..|:                          .||.|||||..
  Fly   568 RALPINRKQKVFPNGTLIIENVERNSDQ--------------------------ATYTCVAKNQE 606

  Fly   360 G-ETDGNIKLDEMPTPTTAIISEMSLLNR--SYD-------GKRRHRNKFDSANALPDYGVEEWR 414
            | ...|::::..|..|.....:...|:|.  |.|       |.|..:..:....:..|||.::.:
  Fly   607 GYSARGSLEVQVMVLPQIVPFAYEDLINMGDSIDLFCQIQKGDRPIKVHWSFERSAGDYGFDQVQ 671

  Fly   415 DGAQGNNAGNNGDNNQTPVRNPPGAFHNSAGSLAQHNLLAKIMLGIKTQSFGIFKRLSSSLPLAA 479
            ...:.|..     :.:|.:.:.|.|   |.....:...:|....|..|.|..:            
  Fly   672 PQMRTNRI-----SEKTSMISIPSA---SPAHTGRDTCIASNKAGTTTYSVDL------------ 716

  Fly   480 GQSFLWLSTLSLVSAPSRWRMSNVENRPNSPETVVNNDTAAEC 522
                       .|:.|.||.:     .|........:|...||
  Fly   717 -----------TVNVPPRWIL-----EPTDKAFAQGSDAKVEC 743

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
DIP-kappaNP_723828.1 Ig 80..172 CDD:299845 22/104 (21%)
IG_like 82..174 CDD:214653 22/104 (21%)
IG_like 184..267 CDD:214653 26/92 (28%)
IGc2 191..255 CDD:197706 21/73 (29%)
IG_like 282..368 CDD:214653 20/100 (20%)
Ig 288..367 CDD:143165 19/93 (20%)
Dscam1NP_001246162.1 Ig 38..130 CDD:299845
IG 57..133 CDD:214652
IG_like 267..343 CDD:214653 12/68 (18%)
Ig 269..340 CDD:143165 12/65 (18%)
IG_like 353..425 CDD:214653 21/92 (23%)
IGc2 361..413 CDD:197706 17/71 (24%)
I-set 433..527 CDD:254352 28/100 (28%)
IGc2 446..517 CDD:197706 21/72 (29%)
I-set 533..618 CDD:254352 22/113 (19%)
IGc2 544..607 CDD:197706 18/88 (20%)
Ig 641..714 CDD:143165 13/80 (16%)
IGc2 735..804 CDD:197706 3/9 (33%)
I-set 819..914 CDD:254352
Ig 833..921 CDD:299845
FN3 918..1011 CDD:238020
FN3 1018..1116 CDD:238020
FN3 1124..1217 CDD:238020
FN3 1222..1312 CDD:238020
Ig 1339..1406 CDD:299845
FN3 1409..1499 CDD:238020
FN3 1504..1584 CDD:238020
Dscam_C 1890..2008 CDD:289151
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG3510
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
21.810

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