DRSC/TRiP Functional Genomics Resources

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Protein Alignment DIP-kappa and musk

DIOPT Version :10

Sequence 1:NP_723828.1 Gene:DIP-kappa / 318958 FlyBaseID:FBgn0051814 Length:672 Species:Drosophila melanogaster
Sequence 2:NP_001004503.1 Gene:musk / 334526 ZFINID:ZDB-GENE-030131-6458 Length:941 Species:Danio rerio


Alignment Length:697 Identity:147/697 - (21%)
Similarity:228/697 - (32%) Gaps:204/697 - (29%)


- Green bases have known domain annotations that are detailed below.


  Fly    74 PRFAEPIANVTVSVGRDALMACVVENLKGYKVAWVRVDTQTILSIHHNVISQNSRISLTYNDHRS 138
            ||....:..|..|:..:|...|.|::.....:.|.|.:..........||.:|.::         
Zfish    26 PRITTLLETVDSSLDHNATFICEVDSYPQADIIWTRNNYPIRYYDSRYVIQENGQM--------- 81

  Fly   139 WYLHIKEVEETDRGWYMCQVNTDPMRSRK-GYLQVVVPPIIVEGLTSNDMVVREGQNISLVCKAR 202
              |.|..|:::|.|.|.|..|.....::. |.||:.:.|.|....| |..::.|.:.: |.|.:.
Zfish    82 --LIIPNVKDSDSGEYCCIANNGVGEAKSCGALQLKMKPQIKRHPT-NMTLILESKAV-LPCLSL 142

  Fly   203 GYPEPYVMWRREDGEEMLIGGEHVNVVDGELLHITKVSRLHMAAYLCVASNGVPPSISKRVHLRV 267
            |||:|.:.|.:||  :::.....:.:::...|.||.:.:.....|.|||.|....:.|:.|.:.|
Zfish   143 GYPKPEISWIKED--DLIKANNRIAILESGSLKITNIKKEDAGQYRCVARNSFGIAFSRPVTIEV 205

  Fly   268 QFP-PMLSIPNQLEGAYLGQDVILECHTEAYPASINYWTTERGDMIISDTSRAGDKYETTSTVSG 331
            |.| .:|.:|.: :...:|.:|.|||:....|.....| .|.|:.|           ...|.|..
Zfish   206 QAPAKILKVPKE-KRVQIGSEVTLECNATGNPIPSITW-LENGNTI-----------SGASVVET 257

  Fly   332 YTKYMKLKIRAVGPNDFGTYRCVAKNSLGETDGNIKLDEMPTPTTAIISEMSLLNRSYDGKRRHR 396
            ....:.|.:..|..:....|.|.|.|                                    ||.
Zfish   258 LVGEVILSVLQVVVHKPALYTCQATN------------------------------------RHS 286

  Fly   397 NKFDSANALPDYGVEEWR--DGAQGNNAGNNGDNNQTPVRNPPGAFHNSAGSL-----AQHNLLA 454
            ...::..|.....|.|||  .|..|..:...||..:..:|.....|.|.  ||     ||..|  
Zfish   287 GGENTVKATAKITVSEWRLYKGHAGYCSTYRGDVCRNVLRRDALVFFNY--SLPNPEDAQEYL-- 347

  Fly   455 KIMLGIKTQSF-----GIFKRLSSSLPLAAGQSFLWLSTL------SLVSAP------------- 495
                   .||.     |:     ||....|.:|.|..||.      .|..||             
Zfish   348 -------AQSAWPELDGV-----SSFCRPAARSLLCHSTFQDCNPSGLGPAPKPVCREHCLTVKE 400

  Fly   496 ----SRWRMSNVENR--------------------PNS----PETVVNND-TAAECWETRSHCVS 531
                ..||.:...::                    |:|    |...:..| ..:.|:..:.....
Zfish   401 LYCYKEWRSAEERSQRGFQHITLPECTSLPSQQADPSSCTAVPYVDIKKDQVTSTCYNDKGRFYQ 465

  Fly   532 ESNNNNNSRI-----TQRPPMWAR-------HLR-IFHIAHTPCGASTQYQRLCERQW------- 576
            .::|...|.|     .|:.|...|       .|| ..:....|.|.|       :|.|       
Zfish   466 GTHNVTASSIPCQRWNQQDPHQHRLSVDVIPELRNAENYCRNPGGES-------DRPWCYTTNPN 523

  Fly   577 -QWQRLWQWQCQ-----------WKWQHQWQWP-------MLICIVILAGCFVRWLPMLLHFIGR 622
             :|:.....:|.           .|..|.:..|       |.:.|.::||           |.|.
Zfish   524 VRWEYCLVPKCGEVISIRTAPSITKPAHFYPPPSVSTAYSMSVIIFVIAG-----------FAGA 577

  Fly   623 HIGTFSISATHRQHLMCTFWDNRGNKVVAKNTTPARPSTFEMLCSRM 669
            ...|..|...||:..|   |..|.::|:...|....||  |:|..|:
Zfish   578 AFFTVLILMCHRRKKM---WKKRKSRVLETPTLTTLPS--ELLLDRL 619

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
DIP-kappaNP_723828.1 IG_like 82..174 CDD:214653 21/92 (23%)
Ig strand B 91..95 CDD:409353 1/3 (33%)
Ig strand C 104..108 CDD:409353 0/3 (0%)
Ig strand E 139..143 CDD:409353 1/3 (33%)
Ig strand F 153..158 CDD:409353 2/4 (50%)
Ig strand G 165..168 CDD:409353 0/3 (0%)
Ig 176..267 CDD:472250 24/90 (27%)
Ig strand B 195..199 CDD:409301 1/3 (33%)
Ig strand C 208..212 CDD:409301 0/3 (0%)
Ig strand E 232..236 CDD:409301 1/3 (33%)
Ig strand F 246..251 CDD:409301 2/4 (50%)
Ig strand G 260..263 CDD:409301 1/2 (50%)
IG_like 282..368 CDD:214653 18/85 (21%)
Ig strand B 288..292 CDD:409353 2/3 (67%)
Ig strand C 301..305 CDD:409353 0/3 (0%)
Ig strand E 330..340 CDD:409353 1/9 (11%)
Ig strand F 350..355 CDD:409353 2/4 (50%)
Ig strand G 363..366 CDD:409353 0/2 (0%)
muskNP_001004503.1 Ig 32..113 CDD:472250 19/91 (21%)
Ig strand B 43..47 CDD:409353 1/3 (33%)
Ig strand C 56..60 CDD:409353 0/3 (0%)
Ig strand E 80..84 CDD:409353 1/14 (7%)
Ig strand F 94..99 CDD:409353 2/4 (50%)
Ig strand G 107..110 CDD:409353 0/2 (0%)
IgI_2_MuSK 119..206 CDD:409560 23/90 (26%)
Ig strand A 119..122 CDD:409560 1/2 (50%)
Ig strand A' 126..128 CDD:409560 1/1 (100%)
Ig strand B 134..142 CDD:409560 2/8 (25%)
Ig strand C 148..153 CDD:409560 1/4 (25%)
Ig strand C' 155..158 CDD:409560 1/4 (25%)
Ig strand D 163..167 CDD:409560 0/3 (0%)
Ig strand E 170..176 CDD:409560 2/5 (40%)
Ig strand F 183..191 CDD:409560 4/7 (57%)
Ig strand G 194..199 CDD:409560 0/4 (0%)
Ig strand G' 201..206 CDD:409560 1/4 (25%)
Ig 212..300 CDD:472250 23/136 (17%)
Ig strand B 226..230 CDD:409353 2/3 (67%)
Ig strand C 239..243 CDD:409353 1/4 (25%)
Ig strand E 260..264 CDD:409353 0/3 (0%)
Ig strand F 276..281 CDD:409353 2/4 (50%)
Ig strand G 293..296 CDD:409353 1/2 (50%)
CRD_TK_ROR_related 309..449 CDD:143578 29/155 (19%)
KR 454..536 CDD:214527 16/88 (18%)
PTKc_Musk 640..930 CDD:133181
Blue background indicates that the domain is not in the aligned region.

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