DRSC/TRiP Functional Genomics Resources

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Protein Alignment DIP-kappa and ncam1a

DIOPT Version :9

Sequence 1:NP_723828.1 Gene:DIP-kappa / 318958 FlyBaseID:FBgn0051814 Length:672 Species:Drosophila melanogaster
Sequence 2:XP_009293555.1 Gene:ncam1a / 30447 ZFINID:ZDB-GENE-990415-31 Length:1010 Species:Danio rerio


Alignment Length:327 Identity:84/327 - (25%)
Similarity:138/327 - (42%) Gaps:47/327 - (14%)


- Green bases have known domain annotations that are detailed below.


  Fly    75 RFAEPIANVTVSVGRDALMACVVENLKGYKVAWVRVDTQTILSIHHNVISQNSRISLTYNDHRSW 139
            |:.|  .|.|..:.:...:||..:......|.|.|.:|:         :..:.:.||  |:..| 
Zfish   214 RYTE--LNATADINQAVTLACHADGYPEPTVKWARGNTE---------LESDEKYSL--NEDGS- 264

  Fly   140 YLHIKEVEETDRGWYMCQV-NTDPMRSRKGYLQVVVPPII--VEGLTSNDMVVREGQNISLVCKA 201
            .|.||:|.:.|.|.|.|.. |....||.:..|.|.|.|.|  :|..|::::    .:.|:|.|:|
Zfish   265 ELTIKDVNKLDEGDYKCIARNKAGERSEEVTLNVFVQPKITFLENQTASEL----EEQITLTCEA 325

  Fly   202 RGYPEPYVMW---RR---EDGEEMLIGGEHVNVVDGELL--HITKVSRLHM--------AAYLCV 250
            .|.|.|.::|   ||   |:.:......|....:||.::  ...:||.|.:        ..|||.
Zfish   326 TGDPTPNIIWSFGRRVFTENEQASWTRPEKHKSLDGNVVVRSDARVSSLTLKYVQFTDAGQYLCT 390

  Fly   251 ASNGVPPSISKRVHLRVQFPPMLSIPNQLEGAYLGQDVILECHTEAYPASINYWTTERGDMIISD 315
            |.|.:...| :.::|.|::.|.:..| |....:.|....:.|...|:|.:...|..:...:..::
Zfish   391 ARNSIGQDI-QSMYLEVRYAPKIQGP-QAVFTWEGNPANITCEALAHPGASVLWFRDGQQLPSAN 453

  Fly   316 TSRAGDKYETTSTVSGYTKYMKLKIRAVGPNDFGTYRCVAKNSLGETDGNIKLDEMPTPTTAIIS 380
            |:..  |...|.|||      .|::.....||||:|.|.|.|.:|.......|.:...|:...|.
Zfish   454 TTNV--KIYNTPTVS------FLEVTPDSQNDFGSYNCTATNVIGTESKEFILVQADVPSAPSIE 510

  Fly   381 EM 382
            .:
Zfish   511 RV 512

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
DIP-kappaNP_723828.1 Ig 80..172 CDD:299845 24/92 (26%)
IG_like 82..174 CDD:214653 25/92 (27%)
IG_like 184..267 CDD:214653 24/98 (24%)
IGc2 191..255 CDD:197706 22/79 (28%)
IG_like 282..368 CDD:214653 21/85 (25%)
Ig 288..367 CDD:143165 20/78 (26%)
ncam1aXP_009293555.1 Ig 20..112 CDD:299845
I-set 21..111 CDD:254352
IG_like 121..200 CDD:214653
IGc2 128..189 CDD:197706
Ig 208..301 CDD:299845 27/100 (27%)
IG_like 219..298 CDD:214653 24/90 (27%)
Ig 300..406 CDD:299845 29/110 (26%)
IG_like 308..406 CDD:214653 26/102 (25%)
ig 413..498 CDD:278476 23/93 (25%)
IG_like 415..498 CDD:214653 23/91 (25%)
fn3 505..589 CDD:278470 1/8 (13%)
FN3 624..715 CDD:238020
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG3510
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
21.810

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