DRSC/TRiP Functional Genomics Resources

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Protein Alignment DIP-kappa and Lsamp

DIOPT Version :9

Sequence 1:NP_723828.1 Gene:DIP-kappa / 318958 FlyBaseID:FBgn0051814 Length:672 Species:Drosophila melanogaster
Sequence 2:XP_038944182.1 Gene:Lsamp / 29561 RGDID:71102 Length:378 Species:Rattus norvegicus


Alignment Length:313 Identity:105/313 - (33%)
Similarity:149/313 - (47%) Gaps:42/313 - (13%)


- Green bases have known domain annotations that are detailed below.


  Fly    72 DFPRFAEPIANVTVSVGRDALMACVVENLKGYKVAWVRVDTQTILSIHHNVISQNSRISLTYNDH 136
            ||.|..:   |:||..|..|::.||||: |..||||  ::...|:...|:..|.:.|:.|.....
  Rat    50 DFNRGTD---NITVRQGDTAILRCVVED-KNSKVAW--LNRSGIIFAGHDKWSLDPRVELEKRHA 108

  Fly   137 RSWYLHIKEVEETDRGWYMCQVNT--DPMRSRKGYLQVVVPPIIVEGLTSNDMVVREGQNISLVC 199
            ..:.|.|::|:..|.|.|.|.|.|  :|..|:. ||.|.|||.|..  .|:|:.|.||.|::|||
  Rat   109 LEYSLRIQKVDVYDEGSYTCSVQTQHEPKTSQV-YLIVQVPPKISN--ISSDVTVNEGSNVTLVC 170

  Fly   200 KARGYPEPYVMWR------RE-DGEEMLIGGEHVNVVDGELLHITKVSRLHMAAYLCVASNGVPP 257
            .|.|.|||.:.||      || :|||             |.|.|..::|.....|.|.|:|.|..
  Rat   171 MANGRPEPVITWRHLTPLGREFEGEE-------------EYLEILGITREQSGKYECKAANEVSS 222

  Fly   258 SISKRVHLRVQFPPMLSIPNQLEGAYLGQDVILECHTEAYPASINYWTTERGDMIISDTSRAGDK 322
            :..|:|.:.|.:||.::.....| |..|:...|:|...|.||....|  .|.|..|:  |..|.:
  Rat   223 ADVKQVKVTVNYPPTITESKSNE-ATTGRQASLKCEASAVPAPDFEW--YRDDTRIN--SANGLE 282

  Fly   323 YETTSTVSGYTKYMKLKIRAVGPNDFGTYRCVAKNSLGETDGNIKLDEMPTPT 375
            .::|...|..|      :..|....:|.|.|||.|.||.|:.::.|.:...||
  Rat   283 IKSTEGQSSLT------VTNVTEEHYGNYTCVAANKLGVTNASLVLFKRVLPT 329

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
DIP-kappaNP_723828.1 Ig 80..172 CDD:299845 32/93 (34%)
IG_like 82..174 CDD:214653 33/93 (35%)
IG_like 184..267 CDD:214653 32/89 (36%)
IGc2 191..255 CDD:197706 26/70 (37%)
IG_like 282..368 CDD:214653 26/85 (31%)
Ig 288..367 CDD:143165 24/78 (31%)
LsampXP_038944182.1 Ig 55..145 CDD:416386 32/96 (33%)
FR1 55..71 CDD:409353 5/18 (28%)
Ig strand A' 56..62 CDD:409353 3/8 (38%)
Ig strand B 64..72 CDD:409353 2/7 (29%)
CDR1 72..76 CDD:409353 2/4 (50%)
FR2 77..84 CDD:409353 4/8 (50%)
Ig strand C 77..83 CDD:409353 4/7 (57%)
CDR2 85..95 CDD:409353 2/9 (22%)
Ig strand C' 87..90 CDD:409353 1/2 (50%)
Ig strand C' 92..95 CDD:409353 1/2 (50%)
FR3 96..131 CDD:409353 10/34 (29%)
Ig strand D 100..107 CDD:409353 2/6 (33%)
Ig strand E 110..116 CDD:409353 1/5 (20%)
Ig strand F 123..131 CDD:409353 3/7 (43%)
CDR3 132..136 CDD:409353 1/3 (33%)
Ig strand G 136..145 CDD:409353 4/9 (44%)
FR4 138..145 CDD:409353 3/7 (43%)
Ig_3 148..218 CDD:404760 31/84 (37%)
Ig strand A' 155..160 CDD:409353 2/4 (50%)
Ig strand B 166..173 CDD:409353 3/6 (50%)
Ig strand C 179..184 CDD:409353 1/4 (25%)
Ig strand D 190..193 CDD:409353 2/2 (100%)
Ig strand E 197..203 CDD:409353 3/5 (60%)
Ig strand F 210..217 CDD:409353 2/6 (33%)
Ig strand G 224..232 CDD:409353 2/7 (29%)
Ig_3 235..311 CDD:404760 25/86 (29%)
Ig strand B 252..256 CDD:409353 1/3 (33%)
Ig strand C 265..269 CDD:409353 1/5 (20%)
Ig strand E 290..294 CDD:409353 2/9 (22%)
Ig strand F 304..309 CDD:409353 2/4 (50%)
Ig strand G 318..321 CDD:409353 0/2 (0%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C166337170
Domainoid 1 1.000 45 1.000 Domainoid score I11853
eggNOG 1 0.900 - - E1_KOG3510
Hieranoid 1 1.000 - -
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D265311at33208
OrthoFinder 1 1.000 - - FOG0000150
OrthoInspector 1 1.000 - - mtm8971
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
SonicParanoid 1 1.000 - - X97
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
109.750

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