DRSC/TRiP Functional Genomics Resources

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Protein Alignment DIP-kappa and Lsamp

DIOPT Version :9

Sequence 1:NP_723828.1 Gene:DIP-kappa / 318958 FlyBaseID:FBgn0051814 Length:672 Species:Drosophila melanogaster
Sequence 2:XP_030104997.1 Gene:Lsamp / 268890 MGIID:1261760 Length:392 Species:Mus musculus


Alignment Length:330 Identity:108/330 - (32%)
Similarity:155/330 - (46%) Gaps:47/330 - (14%)


- Green bases have known domain annotations that are detailed below.


  Fly    63 TQQT----AQEDSDFP----RFAEPIANVTVSVGRDALMACVVENLKGYKVAWVRVDTQTILSIH 119
            |::|    |:|:...|    .|.....|:||..|..|::.||||: |..||||  ::...|:...
Mouse    44 TEETMRKKAKEEEGLPVRSVDFNRGTDNITVRQGDTAILRCVVED-KNSKVAW--LNRSGIIFAG 105

  Fly   120 HNVISQNSRISLTYNDHRSWYLHIKEVEETDRGWYMCQVNT--DPMRSRKGYLQVVVPPIIVEGL 182
            |:..|.:.|:.|.......:.|.|::|:..|.|.|.|.|.|  :|..|:. ||.|.|||.|..  
Mouse   106 HDKWSLDPRVELEKRHALEYSLRIQKVDVYDEGSYTCSVQTQHEPKTSQV-YLIVQVPPKISN-- 167

  Fly   183 TSNDMVVREGQNISLVCKARGYPEPYVMWR------RE-DGEEMLIGGEHVNVVDGELLHITKVS 240
            .|:|:.|.||.|::|||.|.|.|||.:.||      || :|||             |.|.|..::
Mouse   168 ISSDVTVNEGSNVTLVCMANGRPEPVITWRHLTPLGREFEGEE-------------EYLEILGIT 219

  Fly   241 RLHMAAYLCVASNGVPPSISKRVHLRVQFPPMLSIPNQLEGAYLGQDVILECHTEAYPASINYWT 305
            |.....|.|.|:|.|..:..|:|.:.|.:||.::.....| |..|:...|:|...|.||....| 
Mouse   220 REQSGKYECKAANEVSSADVKQVKVTVNYPPTITESKSNE-ATTGRQASLKCEASAVPAPDFEW- 282

  Fly   306 TERGDMIISDTSRAGDKYETTSTVSGYTKYMKLKIRAVGPNDFGTYRCVAKNSLGETDGNIKLDE 370
             .|.|..|:  |..|.:.::|...|..|      :..|....:|.|.|||.|.||.|:.::.|.:
Mouse   283 -YRDDTRIN--SANGLEIKSTEGQSSLT------VTNVTEEHYGNYTCVAANKLGVTNASLVLFK 338

  Fly   371 MPTPT 375
            ...||
Mouse   339 RVLPT 343

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
DIP-kappaNP_723828.1 Ig 80..172 CDD:299845 32/93 (34%)
IG_like 82..174 CDD:214653 33/93 (35%)
IG_like 184..267 CDD:214653 32/89 (36%)
IGc2 191..255 CDD:197706 26/70 (37%)
IG_like 282..368 CDD:214653 26/85 (31%)
Ig 288..367 CDD:143165 24/78 (31%)
LsampXP_030104997.1 Ig 69..159 CDD:386229 32/93 (34%)
Ig_3 163..232 CDD:372822 30/83 (36%)
Ig_3 250..325 CDD:372822 24/85 (28%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C167833582
Domainoid 1 1.000 45 1.000 Domainoid score I12107
eggNOG 00.000 Not matched by this tool.
Hieranoid 1 1.000 - -
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D265311at33208
OrthoFinder 1 1.000 - - FOG0000150
OrthoInspector 1 1.000 - - mtm8732
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R3058
SonicParanoid 1 1.000 - - X97
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
98.880

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