DRSC/TRiP Functional Genomics Resources

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Protein Alignment DIP-kappa and rig-4

DIOPT Version :9

Sequence 1:NP_723828.1 Gene:DIP-kappa / 318958 FlyBaseID:FBgn0051814 Length:672 Species:Drosophila melanogaster
Sequence 2:NP_501339.2 Gene:rig-4 / 177597 WormBaseID:WBGene00004371 Length:2325 Species:Caenorhabditis elegans


Alignment Length:612 Identity:106/612 - (17%)
Similarity:181/612 - (29%) Gaps:223/612 - (36%)


- Green bases have known domain annotations that are detailed below.


  Fly    54 SKGKH---TRLDTQ--QTAQEDSDFPRF-AEPIA-----NVTVSVGRDALMACVVENLKGYKVAW 107
            ::|:|   .|.|..  :|:.:.|.:..| :.||.     .:..:||....:.|.|:......:.|
 Worm   293 TRGEHKLECRADAAMGRTSDQKSAYMTFISRPILKDLPNEIQKTVGSSLSLKCSVKKKSSMDIKW 357

  Fly   108 VRVDTQTILSIHHNVISQNSRISLTYNDHRSWYLHIKEVEETDRGWYMCQ--------------- 157
            .:          :.::....|..||          |..:::.|.|.|.|:               
 Worm   358 YK----------NGLMMTTQRGKLT----------IDRIKQDDFGLYQCEATNAAGADLASVWVK 402

  Fly   158 ------------------------VNTDPMRSRKGY----LQVVVPPIIVE-------GLTSNDM 187
                                    :.|.|.|..|.:    .|..:.|...|       ..|..|:
 Worm   403 EGEANETVATEMSEDGMSLEEEISMETPPPRKLKFFDNSKSQEQLFPFTSELEPSQKLIKTPKDL 467

  Fly   188 VVREG-QNISLVCKARGYPEPYVMWRREDGEEMLIGGEHV---NVV-----DGELLHITKVSRLH 243
            .|..| ..|.:.|.|.|.|.|.::|        |:.|..:   ||.     ||..:|  .:.:..
 Worm   468 TVASGTDRIMMECAATGSPPPNIIW--------LLNGHEIQTDNVKYDLTNDGLAIH--DIRKSD 522

  Fly   244 MAAYLCVASNGVPPSISKRVHLRVQFPPMLSIPNQLEGAYLGQDVILECH-TEAY--PASINYWT 305
            ...|.|..|..   ::....:::|....::......:.:.:|.:|...|. .:.|  .||:.::.
 Worm   523 EGEYTCEISGS---NVKATANVQVNGDSLIEYGPADQKSLIGTNVEFSCEVAKEYVRKASVEWYL 584

  Fly   306 TERGDMIISDTSRAGDKYETTSTVSGYTKYMKLKIRAVGPNDFGTYRCVAKNSLGETDGNIKLDE 370
               .|:::.....:|.:.......|       |.||.|||::.|.|||.......|.:.:..|..
 Worm   585 ---NDVLLPVNGNSGLRISRNRKGS-------LIIRQVGPDNTGEYRCRVTVDGREENASAMLQI 639

  Fly   371 MPTPTTAIISEMSLLNRSYDGKRRHRNKFDSANALPDYGVEEWRDGAQGNNAGNNGDNNQTPVRN 435
            :..|.........|.|.:...|.|.|                |.:|..||.              
 Worm   640 IEKPAMPERVRAELHNETMPAKVRVR----------------WNEGFDGNE-------------- 674

  Fly   436 PPGAFHNSAGSLAQHNLLAKIMLGIKTQSFGIFKRLSSSLPLAAGQSFLWLSTLSLVSAPSRWRM 500
                      .:.:|.:..:.|                      |.:.||          |.|  
 Worm   675 ----------PIIKHAIEMRTM----------------------GPTGLW----------SDW-- 695

  Fly   501 SNVENRPNSPETVVNNDTAAE----CW---------ETRSHCVSESNNNNNSR---------ITQ 543
                      .|.::|....|    ||         .|....|..||.:...:         :.|
 Worm   696 ----------TTAIDNIPKEEGKPCCWTDIEDLRPSSTAEFRVVASNKHGPGKPSLPSYSVTMPQ 750

  Fly   544 RPPMWARHLRIFHIAHTPCGASTQYQR 570
            :||. |....:...|.:|.....|:|:
 Worm   751 QPPS-AAPRNVAASARSPHSVMVQWQQ 776

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
DIP-kappaNP_723828.1 Ig 80..172 CDD:299845 18/139 (13%)
IG_like 82..174 CDD:214653 18/134 (13%)
IG_like 184..267 CDD:214653 20/91 (22%)
IGc2 191..255 CDD:197706 18/72 (25%)
IG_like 282..368 CDD:214653 20/88 (23%)
Ig 288..367 CDD:143165 19/81 (23%)
rig-4NP_501339.2 IG_like 330..402 CDD:214653 13/91 (14%)
IGc2 338..393 CDD:197706 12/74 (16%)
I-set 459..543 CDD:254352 21/96 (22%)
IGc2 478..534 CDD:197706 16/68 (24%)
IG_like 553..639 CDD:214653 21/95 (22%)
Ig 564..635 CDD:143165 19/80 (24%)
FN3 643..747 CDD:238020 26/187 (14%)
FN3 756..850 CDD:238020 4/21 (19%)
FN3 858..954 CDD:238020
FN3 959..1042 CDD:238020
FN3 1057..1151 CDD:238020
FN3 1156..1251 CDD:238020
FN3 1258..1356 CDD:238020
FN3 1361..1453 CDD:238020
FN3 1464..1560 CDD:238020
FN3 1572..1664 CDD:238020
FN3 1679..1764 CDD:238020
FN3 1774..1858 CDD:238020
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG3510
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
21.810

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