DRSC/TRiP Functional Genomics Resources

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Protein Alignment DIP-kappa and ncam1b

DIOPT Version :9

Sequence 1:NP_723828.1 Gene:DIP-kappa / 318958 FlyBaseID:FBgn0051814 Length:672 Species:Drosophila melanogaster
Sequence 2:XP_005157462.1 Gene:ncam1b / 114442 ZFINID:ZDB-GENE-010822-2 Length:1055 Species:Danio rerio


Alignment Length:599 Identity:124/599 - (20%)
Similarity:209/599 - (34%) Gaps:152/599 - (25%)


- Green bases have known domain annotations that are detailed below.


  Fly    35 ATAAVTMLMTATPTLAEIPSKGKHTRLDTQQTAQEDSDFPRFAEPIANVTVSVGRDALMACVVEN 99
            |.|.|.:.:....|...:||..:.|.                           |.:|::.|.|.:
Zfish   103 AEATVNLKIYQKITFTNVPSPQEFTE---------------------------GDNAIIVCDVIS 140

  Fly   100 ------LKGYKVAWVRVDTQTILSIHHNVISQNSRISLTYNDHRSWYLHIKEVEETDRGWYMCQV 158
                  |..||.|.::.|             ::.|.....|:|    |.|:.:.:||.|.|.|:.
Zfish   141 SPPPTVLWKYKGAKIQFD-------------KDVRFKTLSNNH----LQIRGIRKTDEGVYTCEG 188

  Fly   159 NTD-----PMRSRKGYLQVVVPPIIVEGLTSN---DMVVREGQNISLVCKARGYPEPYVMWRRED 215
            ...     ..||.|..:. |:|.|.:....:|   ||    |.:..|.|...|:|||.|.|||.:
Zfish   189 RIKARGEVDFRSIKVVVN-VLPTIRIRQAETNATADM----GFSTLLACDPDGFPEPIVTWRRNN 248

  Fly   216 GEEMLIGGEHVNVVDGELLHITKVSRLHMAAYLCVASNGVPPSISKRVHLRVQFPPMLSIPNQLE 280
            . .:..|.::....||..:.:..|::|....|.|:|.|....| .:.:.|:|...|.::......
Zfish   249 A-PLESGNKYSFNEDGSEMTVLDVTKLDEGDYTCIAKNKAGES-EQELSLKVFVQPKITYLESQT 311

  Fly   281 GAYLGQDVILECHTEAYPASINYWTTERGDMIISDTSRAGDK--YETTST-------------VS 330
            ...:.:.|.|.|.....|.....|:.  |..:.::..:...|  |:.:.|             |.
Zfish   312 TTEMDEQVTLTCEATGDPTPTITWSF--GTRVFTEGEQEQQKRIYQASWTRPEQHKGPDGEVLVR 374

  Fly   331 GYTKYMKLKIRAVGPNDFGTYRCVAKNSLGETDGNIKLDEMPTPTTAIISEMSLLNRSYDGKRRH 395
            ...:...|.::.....|.|.|.|.|:|::|||...:.|:....|  .|:..:::    |..:...
Zfish   375 SDARVSSLTLKYPQYTDAGQYLCTARNAIGETVQPVSLEVRYAP--KILGSVAV----YTWEGNP 433

  Fly   396 RNKFDSANALP-DYGVEEWRDGAQGNNAGNNGDNNQTPVRNPPGAFH-----NSAGSLAQHNLLA 454
            .|......|.| |..:...|||.|..||    :.:...:.|.|.|.:     .|......:|...
Zfish   434 ANISCEVLAHPSDVSITWLRDGFQLPNA----NTSNIKIHNTPSASYLEVNPESQSDFGNYNCTT 494

  Fly   455 KIMLGIKTQSFGIFKRLSSSLPLAAGQSFLWLSTLSLV--------SAP-----SRWR------- 499
            ...:|.:::.|.:......|.| :.|:...:.||..::        ..|     :.||       
Zfish   495 SNEIGTESREFIMIPADVPSAP-SIGEVQPYSSTAQVLFEEPESTGGVPVLKYRAEWRAVGRGKW 558

  Fly   500 ----------MSNVENRPNSPETVVNNDTAAECWETRSHCVSESNNNNNSRITQRPPM--WARHL 552
                      :|:|......|||         .:|.:...::.....::|     |.|  ...|:
Zfish   559 VQRVYEVKDGLSSVTVTGLKPET---------DYEVKMSAINGKGEGDSS-----PSMVFKTEHV 609

  Fly   553 R------IFHIAHT 560
            |      |||. ||
Zfish   610 RYSYTNGIFHF-HT 622

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
DIP-kappaNP_723828.1 Ig 80..172 CDD:299845 22/102 (22%)
IG_like 82..174 CDD:214653 22/102 (22%)
IG_like 184..267 CDD:214653 25/85 (29%)
IGc2 191..255 CDD:197706 20/63 (32%)
IG_like 282..368 CDD:214653 20/100 (20%)
Ig 288..367 CDD:143165 20/93 (22%)
ncam1bXP_005157462.1 Ig 20..112 CDD:299845 3/8 (38%)
I-set 21..111 CDD:254352 3/7 (43%)
IG_like 121..205 CDD:214653 25/127 (20%)
IGc2 128..189 CDD:197706 19/104 (18%)
Ig 208..301 CDD:299845 28/98 (29%)
I-set 212..298 CDD:254352 25/91 (27%)
I-set 298..414 CDD:254352 23/117 (20%)
Ig 300..414 CDD:299845 22/115 (19%)
IG_like 426..505 CDD:214653 17/86 (20%)
Ig 434..505 CDD:143165 16/74 (22%)
FN3 513..606 CDD:238020 17/107 (16%)
FN3 629..720 CDD:238020
Chorion_3 <815..1019 CDD:253174
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - O PTHR12231
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
11.100

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