DRSC/TRiP Functional Genomics Resources

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Protein Alignment DIP-kappa and ncam2

DIOPT Version :9

Sequence 1:NP_723828.1 Gene:DIP-kappa / 318958 FlyBaseID:FBgn0051814 Length:672 Species:Drosophila melanogaster
Sequence 2:NP_571905.1 Gene:ncam2 / 114441 ZFINID:ZDB-GENE-010822-1 Length:795 Species:Danio rerio


Alignment Length:634 Identity:126/634 - (19%)
Similarity:220/634 - (34%) Gaps:137/634 - (21%)


- Green bases have known domain annotations that are detailed below.


  Fly    43 MTATPTLAEIPSKGKHTRLDTQQTAQEDSDFPRFAEPIANVTVSVGRDALMACVVE--------- 98
            |.|:|.:| :.::|..:||.......||:...|     ...|.:.|.......|:|         
Zfish    60 MVASPRVA-LHNEGIRSRLTLYNAKIEDAGIYR-----CQATDAQGETQEATVVLEIYQKLTFRD 118

  Fly    99 -----NLKGYKVAWVRVDTQT----ILSIHHN---VISQNSRISLTYNDHRSWYLHIKEVEETDR 151
                 ..:..:||.|..|..:    ::|..:|   :.....:..|..|::    |.:::|.:.|.
Zfish   119 VRSPQEFRQGEVAEVVCDVTSSPVPVVSWFYNNIEITEDTEKFELLQNNN----LQVQKVTKADE 179

  Fly   152 GWYMCQVNTD---PMRSRKGYLQVVVPPIIVEGLTSNDMVVREGQNISLVCKARGYPEPYVMWRR 213
            |.|.|:...:   .:..|...|.|.|||::.....|.:.....|::::..|:|.|.|||.|.|.|
Zfish   180 GVYRCEARVEARGEIDFRNIILVVNVPPVVSVPQQSFNATADYGESVTFTCRAYGSPEPDVTWHR 244

  Fly   214 EDGEEMLIGGEHVNVVDGELLHITKVSRLHMAAYLCVASNGVPPSISKRVHLRVQFPPMLSIPNQ 278
            : |.::.....:|....|..|.:..:.:....:|.|.|||.. ..:...:.|:|...|.::....
Zfish   245 K-GVQLQESERYVMRARGTTLTVRNIQQDDGGSYTCRASNKA-GEVEHELFLKVFVQPHITKLRN 307

  Fly   279 LEGAYLGQDVILECHTEAYPASINYWTTERGDMIISDTSRAGDKY-ETTSTVSGYTKYMKLKIRA 342
            :. |..|...::.|..|..|.....|.........||    |||. :....|.|......|.|..
Zfish   308 VT-AVEGSAAMISCKAEGEPLPEISWRRASDGHSFSD----GDKSPDGRVEVRGRYGESMLTIVV 367

  Fly   343 VGPNDFGTYRCVAKNSLGETDGNIKLDEMPTPTTAIISEMSLLNRSYDGKRRHRNKFDSANALPD 407
            |..:|:|.:.|.|.:.:|....::.||....|                       ||.:.:.:  
Zfish   368 VKLSDWGRFDCEALSRIGGHQKSMFLDIEYAP-----------------------KFQANHTI-- 407

  Fly   408 YGVEEWRDGAQGNNAGNNGDNNQTPVRNPPGAF----------HNSAGSLAQHNLLAKIMLGIKT 462
              ...|    :||....:.|    .:.|||...          ...||::..:....:.:|.:..
Zfish   408 --FFSW----EGNPVNISCD----VMSNPPATMLWRREKLTIPSEGAGNMRVYTAPGRSLLEVTP 462

  Fly   463 QSFGIFKRLSSSLPLAAG---QSFLWLSTLSLVSAPSRWRMSNVENR---------------PNS 509
            .|...|.|.:.:.....|   |.|: |:...:.|.|...|:|:|..|               |.|
Zfish   463 MSDRDFGRYNCTARNNIGMRFQEFI-LAQADVPSNPYSVRLSSVAQRVATVTFTKPDSHGGVPIS 526

  Fly   510 PETVVNNDTAAECWETRSHCVSESNNNNNSRITQRPPMWARHLRIFHI--------AHT------ 560
            ...|...|.:::.|:.    |..........:|...|.....:|:..:        :||      
Zfish   527 HYLVKYKDISSQDWKD----VKSLGTQTIVLLTNLEPNTTYEVRVSAVNGKGQGEFSHTESFQTL 587

  Fly   561 ----PCGASTQYQR---------LCERQWQWQRLWQWQCQWKWQHQWQW 596
                |...|.|.||         |.::......:.::..::|...:.||
Zfish   588 PIREPSPPSVQGQRGVGKAYRLGLVKQDDGGMPILEYIVKYKTDKEEQW 636

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
DIP-kappaNP_723828.1 Ig 80..172 CDD:299845 20/115 (17%)
IG_like 82..174 CDD:214653 21/115 (18%)
IG_like 184..267 CDD:214653 21/82 (26%)
IGc2 191..255 CDD:197706 19/63 (30%)
IG_like 282..368 CDD:214653 21/86 (24%)
Ig 288..367 CDD:143165 19/79 (24%)
ncam2NP_571905.1 Ig1_NCAM-2 20..111 CDD:143274 14/56 (25%)
I-set 21..110 CDD:254352 13/55 (24%)
IGc2 127..187 CDD:197706 14/63 (22%)
Ig 213..299 CDD:299845 22/87 (25%)
I-set 213..296 CDD:254352 21/84 (25%)
Ig 298..395 CDD:299845 23/101 (23%)
I-set 300..393 CDD:254352 22/97 (23%)
IG_like 411..488 CDD:214653 16/85 (19%)
IGc2 412..480 CDD:197706 12/71 (17%)
FN3 494..586 CDD:238020 17/95 (18%)
fn3 <616..675 CDD:278470 3/21 (14%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - O PTHR12231
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
22.010

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