DRSC/TRiP Functional Genomics Resources

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Protein Alignment DIP-kappa and ncam2

DIOPT Version :10

Sequence 1:NP_723828.1 Gene:DIP-kappa / 318958 FlyBaseID:FBgn0051814 Length:672 Species:Drosophila melanogaster
Sequence 2:NP_571905.1 Gene:ncam2 / 114441 ZFINID:ZDB-GENE-010822-1 Length:795 Species:Danio rerio


Alignment Length:634 Identity:126/634 - (19%)
Similarity:220/634 - (34%) Gaps:137/634 - (21%)


- Green bases have known domain annotations that are detailed below.


  Fly    43 MTATPTLAEIPSKGKHTRLDTQQTAQEDSDFPRFAEPIANVTVSVGRDALMACVVE--------- 98
            |.|:|.:| :.::|..:||.......||:...|     ...|.:.|.......|:|         
Zfish    60 MVASPRVA-LHNEGIRSRLTLYNAKIEDAGIYR-----CQATDAQGETQEATVVLEIYQKLTFRD 118

  Fly    99 -----NLKGYKVAWVRVDTQT----ILSIHHN---VISQNSRISLTYNDHRSWYLHIKEVEETDR 151
                 ..:..:||.|..|..:    ::|..:|   :.....:..|..|::    |.:::|.:.|.
Zfish   119 VRSPQEFRQGEVAEVVCDVTSSPVPVVSWFYNNIEITEDTEKFELLQNNN----LQVQKVTKADE 179

  Fly   152 GWYMCQVNTD---PMRSRKGYLQVVVPPIIVEGLTSNDMVVREGQNISLVCKARGYPEPYVMWRR 213
            |.|.|:...:   .:..|...|.|.|||::.....|.:.....|::::..|:|.|.|||.|.|.|
Zfish   180 GVYRCEARVEARGEIDFRNIILVVNVPPVVSVPQQSFNATADYGESVTFTCRAYGSPEPDVTWHR 244

  Fly   214 EDGEEMLIGGEHVNVVDGELLHITKVSRLHMAAYLCVASNGVPPSISKRVHLRVQFPPMLSIPNQ 278
            : |.::.....:|....|..|.:..:.:....:|.|.|||.. ..:...:.|:|...|.::....
Zfish   245 K-GVQLQESERYVMRARGTTLTVRNIQQDDGGSYTCRASNKA-GEVEHELFLKVFVQPHITKLRN 307

  Fly   279 LEGAYLGQDVILECHTEAYPASINYWTTERGDMIISDTSRAGDKY-ETTSTVSGYTKYMKLKIRA 342
            :. |..|...::.|..|..|.....|.........||    |||. :....|.|......|.|..
Zfish   308 VT-AVEGSAAMISCKAEGEPLPEISWRRASDGHSFSD----GDKSPDGRVEVRGRYGESMLTIVV 367

  Fly   343 VGPNDFGTYRCVAKNSLGETDGNIKLDEMPTPTTAIISEMSLLNRSYDGKRRHRNKFDSANALPD 407
            |..:|:|.:.|.|.:.:|....::.||....|                       ||.:.:.:  
Zfish   368 VKLSDWGRFDCEALSRIGGHQKSMFLDIEYAP-----------------------KFQANHTI-- 407

  Fly   408 YGVEEWRDGAQGNNAGNNGDNNQTPVRNPPGAF----------HNSAGSLAQHNLLAKIMLGIKT 462
              ...|    :||....:.|    .:.|||...          ...||::..:....:.:|.:..
Zfish   408 --FFSW----EGNPVNISCD----VMSNPPATMLWRREKLTIPSEGAGNMRVYTAPGRSLLEVTP 462

  Fly   463 QSFGIFKRLSSSLPLAAG---QSFLWLSTLSLVSAPSRWRMSNVENR---------------PNS 509
            .|...|.|.:.:.....|   |.|: |:...:.|.|...|:|:|..|               |.|
Zfish   463 MSDRDFGRYNCTARNNIGMRFQEFI-LAQADVPSNPYSVRLSSVAQRVATVTFTKPDSHGGVPIS 526

  Fly   510 PETVVNNDTAAECWETRSHCVSESNNNNNSRITQRPPMWARHLRIFHI--------AHT------ 560
            ...|...|.:::.|:.    |..........:|...|.....:|:..:        :||      
Zfish   527 HYLVKYKDISSQDWKD----VKSLGTQTIVLLTNLEPNTTYEVRVSAVNGKGQGEFSHTESFQTL 587

  Fly   561 ----PCGASTQYQR---------LCERQWQWQRLWQWQCQWKWQHQWQW 596
                |...|.|.||         |.::......:.::..::|...:.||
Zfish   588 PIREPSPPSVQGQRGVGKAYRLGLVKQDDGGMPILEYIVKYKTDKEEQW 636

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
DIP-kappaNP_723828.1 IG_like 82..174 CDD:214653 21/115 (18%)
Ig strand B 91..95 CDD:409353 0/3 (0%)
Ig strand C 104..108 CDD:409353 2/3 (67%)
Ig strand E 139..143 CDD:409353 1/3 (33%)
Ig strand F 153..158 CDD:409353 2/4 (50%)
Ig strand G 165..168 CDD:409353 1/2 (50%)
Ig 176..267 CDD:472250 22/90 (24%)
Ig strand B 195..199 CDD:409301 0/3 (0%)
Ig strand C 208..212 CDD:409301 1/3 (33%)
Ig strand E 232..236 CDD:409301 1/3 (33%)
Ig strand F 246..251 CDD:409301 2/4 (50%)
Ig strand G 260..263 CDD:409301 0/2 (0%)
IG_like 282..368 CDD:214653 21/86 (24%)
Ig strand B 288..292 CDD:409353 0/3 (0%)
Ig strand C 301..305 CDD:409353 0/3 (0%)
Ig strand E 330..340 CDD:409353 2/9 (22%)
Ig strand F 350..355 CDD:409353 1/4 (25%)
Ig strand G 363..366 CDD:409353 0/2 (0%)
ncam2NP_571905.1 IgI_1_NCAM-2 20..112 CDD:409452 14/57 (25%)
Ig strand A 20..25 CDD:409452
Ig strand A' 28..32 CDD:409452
Ig strand B 34..44 CDD:409452
Ig strand C 48..54 CDD:409452
Ig strand C' 57..59 CDD:409452
Ig strand D 65..71 CDD:409452 1/6 (17%)
Ig strand E 73..81 CDD:409452 2/7 (29%)
Ig strand F 88..95 CDD:409452 1/11 (9%)
Ig strand G 100..111 CDD:409452 2/10 (20%)
Ig 131..194 CDD:409353 13/66 (20%)
Ig strand B 131..135 CDD:409353 2/3 (67%)
Ig strand C 144..148 CDD:409353 1/3 (33%)
Ig strand F 181..186 CDD:409353 2/4 (50%)
IgI_1_MuSK 213..296 CDD:409562 21/84 (25%)
Ig strand A' 215..220 CDD:409562 1/4 (25%)
Ig strand B 226..233 CDD:409562 1/6 (17%)
Ig strand C 239..244 CDD:409562 2/4 (50%)
Ig strand C' 246..248 CDD:409562 1/1 (100%)
Ig strand D 255..258 CDD:409562 1/2 (50%)
Ig strand E 262..268 CDD:409562 1/5 (20%)
Ig strand F 275..282 CDD:409562 2/6 (33%)
Ig strand G 288..296 CDD:409562 1/7 (14%)
Ig 298..395 CDD:472250 23/101 (23%)
Ig strand B 316..320 CDD:409353 0/3 (0%)
Ig strand C 329..333 CDD:409353 0/3 (0%)
Ig strand E 361..365 CDD:409353 1/3 (33%)
Ig strand F 375..380 CDD:409353 1/4 (25%)
Ig strand G 388..391 CDD:409353 0/2 (0%)
IG_like 411..488 CDD:214653 16/85 (19%)
Ig strand B 416..420 CDD:409353 0/3 (0%)
Ig strand C 429..433 CDD:409353 0/3 (0%)
Ig strand E 456..460 CDD:409353 1/3 (33%)
Ig strand F 470..475 CDD:409353 1/4 (25%)
FN3 <487..>675 CDD:442628 27/155 (17%)
FN3 494..586 CDD:238020 17/95 (18%)
Blue background indicates that the domain is not in the aligned region.

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