DRSC/TRiP Functional Genomics Resources

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Protein Alignment DIP-kappa and chl1b

DIOPT Version :9

Sequence 1:NP_723828.1 Gene:DIP-kappa / 318958 FlyBaseID:FBgn0051814 Length:672 Species:Drosophila melanogaster
Sequence 2:XP_017212175.2 Gene:chl1b / 100318566 ZFINID:ZDB-GENE-091105-1 Length:1294 Species:Danio rerio


Alignment Length:615 Identity:124/615 - (20%)
Similarity:205/615 - (33%) Gaps:210/615 - (34%)


- Green bases have known domain annotations that are detailed below.


  Fly    14 TRRRFRLQAEF-NVRQLAITIIATAAVTM----------------------LMTATPTLAEIPSK 55
            :||.:...|.| .:|    ||:...|::|                      |:...|:|......
Zfish   207 SRRDYCCFAAFPRIR----TIVQKTAMSMVVKSNKLMKDSSSGSGRGYANSLLERKPSLLAPTGM 267

  Fly    56 GKHTRLDTQQTAQEDSDFPRFAEPIANVTVSVGRDALMACVVENLKGYKVAWVRVDTQTILSIHH 120
            ..||||                        ..|.|..:.|:.|.....||.||::....:  ...
Zfish   268 ESHTRL------------------------VKGEDLQLECIAEGFPTPKVEWVKIGFNKL--PER 306

  Fly   121 NVISQNSRISLTYNDHRSWYLHIKEVEETDRGWYMCQVNTDPMRSRKGYLQVVV--PPIIVEGLT 183
            .|:..:.::           |.::.|.|.|.|.|||:.. :|......:..|.|  ||..  .:.
Zfish   307 VVVESHGKL-----------LTVEMVNEEDEGKYMCRAK-NPHGEVVHHFHVTVEEPPEF--EIE 357

  Fly   184 SNDMVVREGQNISLVCKARGYPEPYVMWRREDGEEMLIGGEHVNVV---------DGELLHITKV 239
            ....:|..|.::.:.|..:|.|:|.|.||        :.|..:|.|         || .:.|...
Zfish   358 PQSQLVTIGADVLIKCVVKGNPQPTVGWR--------VNGRPLNEVPTSNRKILKDG-TISIHNA 413

  Fly   240 SRLHMAAYLCVASNGVPPSISKRVHLRVQFPPMLSIPNQLEGAYL---GQDVILECHTEAYPASI 301
            :..:.|.|.|.|:|.....::....:.:...|::...|.|:  |:   |:.|::.|...:.|||.
Zfish   414 NPENSAVYQCEATNKHGTILANANIMIMNIQPLILTENNLQ--YMAVEGKSVVMHCKVFSSPASS 476

  Fly   302 NYWTTERGDMIISDTSRAGDKYETTSTVSG--YTKYM--KLKIRAVGPNDFGTYRCVAKNSLGET 362
            ..|:                |.::.:.|.|  :|.:.  .|:|..|...|.|.|.|.|:|    |
Zfish   477 ITWS----------------KADSANAVEGERFTVHQNGSLEIHNVMKEDMGEYSCFAQN----T 521

  Fly   363 DGNIKLD---EMPTPTTAIISEMSLLNRSYDGKRRH---RNKFDSANALPDYGVE---EW-RDGA 417
            :|.:.:.   |:..||..:.....|  |...|....   :.:||     |.:|.:   .| :||.
Zfish   522 EGKVAIAATLEVKDPTRIVDPPRDL--RVLAGTTIQFSCQPEFD-----PSFGDDFEVLWEKDGI 579

  Fly   418 QGNNAGNNGDNNQTPVRNPPGAFHNSAGSLAQHNLLAKIMLGIKTQSFGI--FKRLSSSLPLAAG 480
            ..|                        ||.....:|...:|.|...|||.  |....:..|:...
Zfish   580 ALN------------------------GSEDGRYILEDGVLEIINVSFGDQGFYACVARTPVDQD 620

  Fly   481 QSFLWLSTLSLVSAPSRWRMSNVENRPNSPETVVNNDTAAECWETRSHCVSESN----------- 534
            .:...||.:.:               |:.||.|:               :||.|           
Zfish   621 VAVAQLSVVDV---------------PDPPEDVI---------------LSEHNGRSVKLQWTPG 655

  Fly   535 NNNNSRITQ----------RPPMWARHLRI 554
            :::||.||:          .|..|...:|:
Zfish   656 DDHNSSITEFVLEFEESQHEPGSWREMMRV 685

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
DIP-kappaNP_723828.1 Ig 80..172 CDD:299845 18/91 (20%)
IG_like 82..174 CDD:214653 19/91 (21%)
IG_like 184..267 CDD:214653 20/91 (22%)
IGc2 191..255 CDD:197706 19/72 (26%)
IG_like 282..368 CDD:214653 23/92 (25%)
Ig 288..367 CDD:143165 21/82 (26%)
chl1bXP_017212175.2 Ig 61..135 CDD:325142
Ig 138..231 CDD:325142 8/27 (30%)
Ig 279..348 CDD:325142 17/82 (21%)
Ig 366..438 CDD:325142 19/80 (24%)
IG 454..533 CDD:214652 23/100 (23%)
I-set 538..628 CDD:333254 22/120 (18%)
FN3 632..722 CDD:238020 14/69 (20%)
FN3 734..815 CDD:238020
FN3 832..931 CDD:238020
fn3 942..1022 CDD:306538
FN3 1070..1142 CDD:214495
Bravo_FIGEY 1196..1279 CDD:316405
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - LDO PTHR12231
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
11.100

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