DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment CG31787 and tmed1b

DIOPT Version :10

Sequence 1:NP_724105.1 Gene:CG31787 / 318941 FlyBaseID:FBgn0051787 Length:232 Species:Drosophila melanogaster
Sequence 2:NP_001074109.2 Gene:tmed1b / 791158 ZFINID:ZDB-GENE-070112-1112 Length:226 Species:Danio rerio


Alignment Length:224 Identity:77/224 - (34%)
Similarity:116/224 - (51%) Gaps:16/224 - (7%)


- Green bases have known domain annotations that are detailed below.


  Fly    10 LLQLLLLLDLKFSNAEPHNKQLTVFAEAGRQECFYQPIATTENIKIDYQVIHG-GLGETHINFNL 73
            ||..:.||....:...|.:.:.|....|..:|||||......:::|:||||.| |:   .::|::
Zfish    11 LLGYVTLLFGAVNAFSPADTEFTFLLPAASKECFYQSAVHNGSVEIEYQVIAGAGM---DVDFSV 72

  Fly    74 MDPSRRLLIAETKRQMGKHSIQANETGSYKFCFDNTISTFNQKIVSFTLEV------APADREER 132
            :.|....||:|.:|..|.|.::..|.|.|:.|||||.|.|::|:|.|.:.:      |.||.|..
Zfish    73 VSPQGIHLISEFRRSDGVHMVEPTEEGDYQICFDNTFSRFSEKMVFFEVILDHPSNDAGADDEWA 137

  Fly   133 ELRDLRQEMLTDYHFDVAYTGIDSYVGKIHVNLMRSRQTQDFIRAIEARDRNVAESTYSMVNKWS 197
            .|.:  .|.:.:|..|    .|...:..:|..|.||||.|.|:||.||||||:.|.....|:.||
Zfish   138 GLGE--PESILEYKLD----DIKESMETVHRRLERSRQMQTFLRAFEARDRNLLEDNLWRVSFWS 196

  Fly   198 WAQFLSMIFVGFLQVLMVRSIFNTTGTFY 226
            ....|.::.|.|:||..:|.:|:.....|
Zfish   197 CVNLLVLLSVAFIQVYTLRRLFDDKRRVY 225

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG31787NP_724105.1 EMP24_GP25L 31..220 CDD:426051 70/195 (36%)
tmed1bNP_001074109.2 None

Return to query results.
Submit another query.