DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG31787 and tmed1

DIOPT Version :9

Sequence 1:NP_724105.1 Gene:CG31787 / 318941 FlyBaseID:FBgn0051787 Length:232 Species:Drosophila melanogaster
Sequence 2:NP_001039263.1 Gene:tmed1 / 734138 XenbaseID:XB-GENE-1017173 Length:220 Species:Xenopus tropicalis


Alignment Length:211 Identity:79/211 - (37%)
Similarity:116/211 - (54%) Gaps:8/211 - (3%)


- Green bases have known domain annotations that are detailed below.


  Fly    13 LLLLLDLKFSNA-EPHNKQLTVFAEAGRQECFYQPIATTENIKIDYQVIHGGLGETHINFNLMDP 76
            |.::|.|..:.| :|.:.:||....|||||||||......:::|:|||| ||.| ..::|::..|
 Frog     8 LFIVLPLAAAVAVQPQDTELTFLLPAGRQECFYQTTLYNGSMEIEYQVI-GGAG-LDVDFSVTTP 70

  Fly    77 SRRLLIAETKRQMGKHSIQANETGSYKFCFDNTISTFNQKIVSFTL--EVAPADREERELRDLRQ 139
            |..|||.|.:|..|.|:::..|.|.|..||||:.||.::|:|.|.|  :....|.|.....|:.:
 Frog    71 SGILLIMERRRSDGVHTVEPTEAGDYMICFDNSFSTISEKLVFFELIFDNQQGDEEPDSWADVVE 135

  Fly   140 EMLTDYHFDVAYTGIDSYVGKIHVNLMRSRQTQDFIRAIEARDRNVAESTYSMVNKWSWAQFLSM 204
               .|...|:....|...:..:...|.||.|.|..:||.||||||:.:|....||.||......:
 Frog   136 ---PDELLDIKLEDIKESIESVKSRLERSIQMQTVLRAFEARDRNLQDSNLERVNFWSAINVGVL 197

  Fly   205 IFVGFLQVLMVRSIFN 220
            :.|.||||.|::|:|:
 Frog   198 VTVAFLQVYMLKSLFD 213

Known Domains:


Indicated by green bases in alignment.

Software error:

Illegal division by zero at /www/www.flyrnai.org/docroot/cgi-bin/DRSC_prot_align.pl line 591.

For help, please send mail to the webmaster (ritg@hms.harvard.edu), giving this error message and the time and date of the error.

GeneSequenceDomainRegion External IDIdentity
CG31787NP_724105.1 EMP24_GP25L 30..220 CDD:279450 73/191 (38%)
tmed1NP_001039263.1 EMP24_GP25L 26..212 CDD:366467 73/190 (38%)
COPI vesicle coat-binding. /evidence=ECO:0000255 211..220 1/3 (33%)