DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG31787 and Tmed10

DIOPT Version :10

Sequence 1:NP_724105.1 Gene:CG31787 / 318941 FlyBaseID:FBgn0051787 Length:232 Species:Drosophila melanogaster
Sequence 2:NP_081051.1 Gene:Tmed10 / 68581 MGIID:1915831 Length:219 Species:Mus musculus


Alignment Length:232 Identity:49/232 - (21%)
Similarity:86/232 - (37%) Gaps:58/232 - (25%)


- Green bases have known domain annotations that are detailed below.


  Fly     9 WLLQLLL----LLDLKFSNAEPHNKQLTVFAEAGRQECFYQPIATTENIKIDYQVIHGGLGETHI 69
            ||..|||    :|.:.|        .|.|.:....:|..::.:..|...:|..|  .||.|....
Mouse    18 WLFLLLLGPSSVLGISF--------HLPVNSRKCLREEIHKDLLVTGAYEITDQ--SGGAGGLRT 72

  Fly    70 NFNLMDPSRRLLIAETKRQMGKHSIQANETGSYKFCFDNT-----------------ISTFNQKI 117
            :..:.|.:..:|.|:.....||.:....:...::.||::.                 :...|.:.
Mouse    73 HLKITDSAGHILYAKEDATKGKFAFTTEDYDMFEVCFESKGTGRIPDQLVILDMKHGVEAKNYEE 137

  Fly   118 VSFTLEVAPADREERELRDLRQEMLTDYHFDVAYTGIDSYVGKIHVNLMRSRQTQDFIRAIEARD 182
            ::...::.|.:.|.|.|.||.:.::.|:    ||              |:.|:.       |.||
Mouse   138 IAKVEKLKPLEVELRRLEDLSESIVNDF----AY--------------MKKREE-------EMRD 177

  Fly   183 RNVAESTYSMVNKWSWAQFLSMIFVGFLQVLMVRSIF 219
            .|  |||.:.|..:|......:|.:...||..:|..|
Mouse   178 TN--ESTNTRVLYFSIFSMFCLIGLATWQVFYLRRFF 212

Known Domains:


Indicated by green bases in alignment.

Software error:

Illegal division by zero at /www/www.flyrnai.org/docroot/cgi-bin/DRSC_prot_align.pl line 592.

For help, please send mail to the webmaster (ritg@hms.harvard.edu), giving this error message and the time and date of the error.

GeneSequenceDomainRegion External IDIdentity
CG31787NP_724105.1 EMP24_GP25L 31..220 CDD:426051 42/206 (20%)
Tmed10NP_081051.1 Required for interaction with STX17. /evidence=ECO:0000250 1..142 24/133 (18%)
EMP24_GP25L 31..213 CDD:426051 43/219 (20%)
Required for TMED10 and TMED2 cis-Golgi network localization. /evidence=ECO:0000250 147..178 12/55 (22%)
Interaction with COPG1. /evidence=ECO:0000250 204..219 4/9 (44%)
Interaction with ARF1 and IL1B. /evidence=ECO:0000250|UniProtKB:P49755 207..219 2/6 (33%)
COPI vesicle coat-binding. /evidence=ECO:0000255 211..219 1/2 (50%)