DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment CG31787 and Tmed11

DIOPT Version :10

Sequence 1:NP_724105.1 Gene:CG31787 / 318941 FlyBaseID:FBgn0051787 Length:232 Species:Drosophila melanogaster
Sequence 2:NP_080385.2 Gene:Tmed11 / 67366 MGIID:1914616 Length:215 Species:Mus musculus


Alignment Length:230 Identity:50/230 - (21%)
Similarity:85/230 - (36%) Gaps:49/230 - (21%)


- Green bases have known domain annotations that are detailed below.


  Fly    13 LLLLLDLKFSNAEPHNKQLTVFAEAGRQE--CFYQPIAT----TENIKI--------DYQVIHGG 63
            :||.....||.|        .:..||.:|  |..:.|.:    |...|:        |:.....|
Mouse     6 ILLCFSFSFSAA--------FYFHAGEREEKCIIEDIPSDTLITGTFKVQQWDIVRHDFLESAPG 62

  Fly    64 LG--ETHINFNLMDPSRRLLIAETKRQMGKHSIQANETGSYKFCFDNTISTFNQKIVSFTLEVAP 126
            ||  .|...:|     ..:|:::.....|.....::.:|.:..|.::..:.|    |||      
Mouse    63 LGMFVTVTTYN-----DEVLLSKLYGAQGTFYFTSHSSGEHIICLESNSTQF----VSF------ 112

  Fly   127 ADREERELRDLRQEMLTDYHFDVAYTGIDSYVGKIHVNLM-------RSRQTQDFIRAIEARDRN 184
            ...:.|...|:|   :.::..|.|.......|.::...|.       :..:.||:.|..|...|.
Mouse   113 GGSKLRIHLDIR---VGEHDLDAAIVQAKDKVNEVTFKLQHLIEQVEQILKEQDYQRDREENFRI 174

  Fly   185 VAESTYSMVNKWSWAQFLSMIFVGFLQVLMVRSIF 219
            .:|.|...|..|::||.|..|.||..|:..::..|
Mouse   175 TSEDTNRNVLWWAFAQILIFISVGIFQMKHLKDFF 209

Known Domains:


Indicated by green bases in alignment.

Software error:

Illegal division by zero at /www/www.flyrnai.org/docroot/cgi-bin/DRSC_prot_align.pl line 592.

For help, please send mail to the webmaster (ritg@hms.harvard.edu), giving this error message and the time and date of the error.

GeneSequenceDomainRegion External IDIdentity
CG31787NP_724105.1 EMP24_GP25L 31..220 CDD:426051 45/212 (21%)
Tmed11NP_080385.2 EMP24_GP25L 17..210 CDD:426051 46/219 (21%)
COPI vesicle coat-binding. /evidence=ECO:0000255 208..215 1/2 (50%)