DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment CG31787 and tmed-3

DIOPT Version :10

Sequence 1:NP_724105.1 Gene:CG31787 / 318941 FlyBaseID:FBgn0051787 Length:232 Species:Drosophila melanogaster
Sequence 2:NP_491892.1 Gene:tmed-3 / 172372 WormBaseID:WBGene00019003 Length:203 Species:Caenorhabditis elegans


Alignment Length:219 Identity:62/219 - (28%)
Similarity:97/219 - (44%) Gaps:28/219 - (12%)


- Green bases have known domain annotations that are detailed below.


  Fly    10 LLQLLLLLDLKFSNAEPHNKQLTVFAEAGRQECFYQPIATTENIKIDYQVIHGGLGETHINFNLM 74
            |:.|.|.::|.|...:..|            :|||:.:....:...::||:.||    |.:.:|:
 Worm    11 LVALGLSIELTFELPDNAN------------QCFYEDLKKDVDTVFEFQVVTGG----HYDVDLI 59

  Fly    75 --DPSRRLLIAETKRQMGKHSIQANETGSYKFCFDNTISTFNQKIVSFTLEVAPADREERELRDL 137
              ||:.::|..:||:|....:.:|...|:||.||.|..|||:.|||..       |.:..:...|
 Worm    60 IEDPNGKVLYKDTKKQYDSINFKAEVEGTYKACFSNEFSTFSHKIVYM-------DWQFGDQNAL 117

  Fly   138 RQEMLTDYHFDVAYTGIDSYVGKIHVNLMRSRQTQDFIRAIEARDRNVAESTYSMVNKWSWAQFL 202
            ...:....|   |.|.:::|...|...|......|...|..||..|..||.....|..||..|..
 Worm   118 HAAVTQGAH---AMTQLENYAVAIGDKLRTIDDYQTHHRLREATGRKRAEELNERVMIWSLGQSA 179

  Fly   203 SMIFVGFLQVLMVRSIFNTTGTFY 226
            .::|:|..||.:::|.||...|.|
 Worm   180 VVVFIGIGQVFLLKSFFNDKRTRY 203

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG31787NP_724105.1 EMP24_GP25L 31..220 CDD:426051 52/190 (27%)
tmed-3NP_491892.1 EMP24_GP25L 19..197 CDD:426051 55/203 (27%)

Return to query results.
Submit another query.