DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG31787 and Tmed1

DIOPT Version :9

Sequence 1:NP_724105.1 Gene:CG31787 / 318941 FlyBaseID:FBgn0051787 Length:232 Species:Drosophila melanogaster
Sequence 2:NP_034874.2 Gene:Tmed1 / 17083 MGIID:106201 Length:227 Species:Mus musculus


Alignment Length:220 Identity:71/220 - (32%)
Similarity:114/220 - (51%) Gaps:10/220 - (4%)


- Green bases have known domain annotations that are detailed below.


  Fly     4 IARVIWLLQLLLLLDLKFSNAEP---HNKQLTVFAEAGRQECFYQPIATTENIKIDYQVIHGGLG 65
            :|..:|    |||..:....|.|   .:.:.|....|||::||||......:::.:|||| ||.|
Mouse     8 VALALW----LLLPAVGVGEAGPPPIQDGEFTFLLPAGRKQCFYQSAPANASLETEYQVI-GGAG 67

  Fly    66 ETHINFNLMDPSRRLLIAETKRQMGKHSIQANETGSYKFCFDNTISTFNQKIVSFTLEVAPADRE 130
             ..::|.|..|...||::|:::..|.|:::..|.|.|:.||||:.||.::|:|.|.| :..:.::
Mouse    68 -LDVDFTLESPQGVLLVSESRKADGVHTVEPTEAGDYRLCFDNSFSTISEKLVFFEL-IFDSFQD 130

  Fly   131 ERELRDLRQEMLTDYHFDVAYTGIDSYVGKIHVNLMRSRQTQDFIRAIEARDRNVAESTYSMVNK 195
            |.|:....:.:..:...||....|...:..:...|.||.|....:||.||||||:.|.....||.
Mouse   131 EEEVEGWAEAVEPEEMLDVKMEDIKESIETMRTRLERSIQMLTLLRAFEARDRNLQEDNLERVNF 195

  Fly   196 WSWAQFLSMIFVGFLQVLMVRSIFN 220
            ||.|....::.|..|||..::..|:
Mouse   196 WSAANVAVLLLVAVLQVCTLKRFFH 220

Known Domains:


Indicated by green bases in alignment.

Software error:

Illegal division by zero at /www/www.flyrnai.org/docroot/cgi-bin/DRSC_prot_align.pl line 591.

For help, please send mail to the webmaster (ritg@hms.harvard.edu), giving this error message and the time and date of the error.

GeneSequenceDomainRegion External IDIdentity
CG31787NP_724105.1 EMP24_GP25L 30..220 CDD:279450 63/189 (33%)
Tmed1NP_034874.2 EMP24_GP25L 33..219 CDD:366467 63/188 (34%)
COPI vesicle coat-binding. /evidence=ECO:0000255 218..227 1/3 (33%)