back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits

Protein Alignment CG31787 and Tmed4

DIOPT Version :10

Sequence 1:	NP_724105.1	Gene:	CG31787 / 318941	FlyBaseID:	FBgn0051787	Length:	232	Species:	Drosophila melanogaster
Sequence 2:	NP_598781.1	Gene:	Tmed4 / 103694	MGIID:	1915070	Length:	227	Species:	Mus musculus

Alignment Length:	235	Identity:	49/235 - (20%)
Similarity:	80/235 - (34%)	Gaps:	79/235 - (33%)

- Green bases have known domain annotations that are detailed below.

  Fly    31 LTVFAEAGR----------QECFYQPIATTENIKIDYQV------------IHGGLGETHINFNL 73
            |||.|...|          :.||.:.|.....:..:|:.            ...|||   ::..:
Mouse    20 LTVCAACARGLYFHIGETEKRCFIEEIPDETMVIGNYRTQMWDKQKEVFLPSTPGLG---MHVEV 81

  Fly    74 MDPSRRLLIAETKRQMGKHSIQANETGSYKFCFDNTISTFNQKIVSFTLEVAPADREERELRDLR 138
            .||..:::::......|:.:..::..|.::.|..:. ||.........|.|
Mouse    82 KDPDGKVVLSRQYGSEGRFTFTSHTPGDHQICLHSN-STRMALFAGGKLRV-------------- 131

  Fly   139 QEMLTDYHFDVAYTGIDSYVGKIHVN--------------LMRSRQ----------TQDFIRAIE 179
                   |.|:       .||: |.|              .:|:||          .||:.|..|
Mouse   132 -------HLDI-------QVGE-HANNYPEIAAKDKLTELQLRARQLLDQVEQIQKEQDYQRYRE 181

  Fly   180 ARDRNVAESTYSMVNKWSWAQFLSMIFVGFLQVLMVRSIF 219
            .|.|..:|||...|..||.||.:.:|..|..|:..::|.|
Mouse   182 ERFRLTSESTNQRVLWWSIAQTVILILTGIWQMRHLKSFF 221

Known Domains:

Indicated by green bases in alignment.

Software error:

Illegal division by zero at /www/www.flyrnai.org/docroot/cgi-bin/DRSC_prot_align.pl line 592.

For help, please send mail to the webmaster (ritg@hms.harvard.edu), giving this error message and the time and date of the error.