DRSC/TRiP Functional Genomics Resources

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Protein Alignment NimA and Scarf2

DIOPT Version :10

Sequence 1:NP_609691.6 Gene:NimA / 318930 FlyBaseID:FBgn0261514 Length:565 Species:Drosophila melanogaster
Sequence 2:XP_038944006.1 Gene:Scarf2 / 287949 RGDID:1306013 Length:838 Species:Rattus norvegicus


Alignment Length:441 Identity:105/441 - (23%)
Similarity:153/441 - (34%) Gaps:126/441 - (28%)


- Green bases have known domain annotations that are detailed below.


  Fly    80 CMEIPPRCATFKTEMREVMRVQKLNKTRTVRFCCQGYEGNLSDSQATCKPICRGG--CGR--GSC 140
            |..:..||.|.:...         |.|:..:.|..|:.|.....:  |.| ||.|  |..  |.|
  Rat   287 CTVVEGRCLTCEPGW---------NGTKCDQPCATGFYGEGCGHR--CPP-CRDGHACNHVTGKC 339

  Fly   141 VMPDICSCEEGYIGKHCTQRCDHDRWGLDCKNLCQCQNGAACDNKSGLCHCIAGWTGQFCELPCP 205
            .     .|..|:||..|..:|.:..:|.||..:|.......||.:||.|.|..|..|..|.:.||
  Rat   340 T-----HCNAGWIGDRCETKCSNGTYGEDCAFVCSDCGSGHCDFQSGRCLCSPGVHGPHCNVTCP 399

  Fly   206 QGTYGIMCRKACDCDEKPCNPQTGACIQQDQPLQ--LNVSHVIVETVNSTLEKMGII-------- 260
            .|.:|:.|.:||.|.|:.|:|.||||..:....:  :....::...:...|..:|..        
  Rat   400 AGLHGVDCAQACSCHEESCDPVTGACHLETNQRKGVMGAGALLTLLLGLLLSLLGCCCACRGKDS 464

  Fly   261 ---PRPTTPVPL-----PE-------VIVIKQPTSNENAQHSPKIIV-HQSSSDLLENLHTAAAA 309
               |||...:.|     |:       .|.:|.|......|..||::| |....:.|........:
  Rat   465 ARRPRPRRELTLGRKKAPQRFCGSFSRISMKLPRIPLRRQKLPKVVVAHHDLDNTLNCSFLEPPS 529

  Fly   310 GVPTPEVIHVITNGITSPQEHLAGFVGGEANSSQTATADHQSGLVVTLVSIMLLLLVAIAVGSLY 374
            |:..|           ||.      ....|:.|...|.|.                     |.:|
  Rat   530 GLEQP-----------SPS------WSSRASFSSFDTTDE---------------------GPVY 556

  Fly   375 VYRRYHHKNAAVYN----ANGTVTTLPANPEVVLTEAAVLGKNFHEPLPEPPVAFAVTPQSNEAQ 435
            .   ..|:.|...|    |:.::|.:||   |.|.                |:..:|......|.
  Rat   557 C---VPHEEATAENRDPEASASLTEVPA---VSLA----------------PMGTSVPGDEAAAL 599

  Fly   436 PELYDSPSNNSSIKTPP---YA-YARKES-----------LYSVVSPKSRK 471
            |...||..:.||::.|.   || .||:|:           |....||:.||
  Rat   600 PASSDSERSASSVEGPGGALYARVARREARPARTRCEAGGLSLSPSPERRK 650

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
NimANP_609691.6 EMI 51..118 CDD:462204 8/37 (22%)
Scarf2XP_038944006.1 PHA03247 <683..837 CDD:223021
Blue background indicates that the domain is not in the aligned region.

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