DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment NimA and Stab2

DIOPT Version :9

Sequence 1:NP_001285918.1 Gene:NimA / 318930 FlyBaseID:FBgn0261514 Length:565 Species:Drosophila melanogaster
Sequence 2:XP_038934441.1 Gene:Stab2 / 282580 RGDID:628822 Length:2569 Species:Rattus norvegicus


Alignment Length:757 Identity:153/757 - (20%)
Similarity:233/757 - (30%) Gaps:310/757 - (40%)


- Green bases have known domain annotations that are detailed below.


  Fly     1 MIREKLFGKLLLLLAMVLPLGSG---QN-----------------STLKINTNVKDIEA------ 39
            |.|.|||..:||.|   :||..|   ||                 |||.|.|..:...|      
  Rat     1 MGRSKLFLSMLLPL---IPLFLGLVVQNACSPTEGPELAKRCDKKSTLTIKTECQSCSANFAVKC 62

  Fly    40 --GVVALPSIQGPGNICIREEPYVEHVQVPEMQPVRVRTSSWCMEIPPRCATFKTEMREVMRVQK 102
              |.:.:.|    |:..:|:..|...:|            |:.:.| |.|       |.:.|...
  Rat    63 PDGYIKVTS----GSAGVRDCRYSLDIQ------------SYVLAI-PGC-------RHICRKDY 103

  Fly   103 LNKTRTVRFCCQGYEGNLSDSQATCKPICRGGC-----GRGSCVMPD-------ICSCEEGYIGK 155
            |...     ||.|:.|      ..|.. |.||.     |||.|   |       .|||:.|:.|.
  Rat   104 LQPQ-----CCPGHWG------PDCME-CPGGARAPCGGRGVC---DEGMEGTGSCSCQAGFSGT 153

  Fly   156 HCTQRCDHDR-WGLDCKNLCQCQNGAACD---NKSGLCHCIAGWTGQFCELP--------CPQGT 208
            .| :.|..|. :|.:|..:|.|.:| .|:   |..|.|.|::.:.|..|:.|        ||:.:
  Rat   154 AC-EACATDNVFGPNCSAVCSCVHG-VCNSGLNGDGTCECLSAYRGPKCDKPIPECATLLCPENS 216

  Fly   209 Y----------------------GIMCRKACDCDEKPCNPQTG---------ACIQQD------- 235
            .                      |..||....|.:..|:|...         :||.|.       
  Rat   217 RCSPSSKDETKLQCKCLPNYEGDGHNCRPINPCLKTICHPHASCSYLGPNRHSCICQKGYQGDGQ 281

  Fly   236 -----QPLQLNVSHVIVETVNSTLEKMGIIPRPTTPVPLPEVIVIKQPTSNEN----AQHSPKII 291
                 .|.|.|               .|..|        ||..|.|.....::    .:|....:
  Rat   282 VCLPVDPCQTN---------------YGKCP--------PESTVCKYDGPGQSHCECKEHYRNFV 323

  Fly   292 --VHQSSSDLLEN---LHTAAAAGVPTPEVIHVITNGIT--SPQEHLAGFVGGEAN--------- 340
              |..|.:|:.|:   .|..|.....:|        |.|  :.|:   |:||...|         
  Rat   324 PGVGCSMTDICESNNPCHKNANCSTVSP--------GKTKCTCQK---GYVGDGLNCYGNIMQRL 377

  Fly   341 -SSQTATADHQSGLVVTLVSIM-------------------------------LLL--------- 364
             ...|.......|.:.:.:||:                               ||:         
  Rat   378 RELNTEPRGMWQGQLTSFISILDRTYAWPLSNLGPFTVLLPSDKGLKGVDVKELLMDKEAARYFA 442

  Fly   365 LVAIAVGSLYVYRRYH--------HKNAAVYNA---NGTVTTLPANPEVVLTEAAVLGKN----- 413
            .:.|..|.:.:.:.||        .|:..::|.   |.....|..:..|.:.:..::..|     
  Rat   443 KLHIIAGQMSMEQMYHLDTFYTLTGKSGEIFNKDKDNQLKLKLHGSKVVKIIQGNIVASNGLVHI 507

  Fly   414 FHEPLPEPPVAFAVTPQS--------------------------NEAQPELYDSPSNN--SSIKT 450
            ....:.:....||..||.                          :|..|.....|||.  |::|.
  Rat   508 LDRAMDKTEPTFASNPQQTIMAMLQPRYGRFRSLLEKTNVGQILDEGGPYTIFVPSNEALSNMKA 572

  Fly   451 PPYAYARKESLYSVVSPK-SRKGSLDSHLYDEIRYHQQHHHQQH--------HPRS--HQHVQHS 504
            ....|        ::||: |||      |.:.:|||.....|..        |.||  :|.::.:
  Rat   573 DILDY--------LLSPEGSRK------LLELVRYHIVAFTQLEVATLVSTPHIRSMANQIIKFN 623

  Fly   505 TTASQFLPARPQIMPANDQFSNGSV-HPHQRSHHVTHLIIPP 545
            .|      ::.||:..|.......| ..:.|.:.:|.::|||
  Rat   624 IT------SKGQILANNVAMDETEVAAKNGRIYTLTGVLIPP 659

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
NimANP_001285918.1 EMI 52..116 CDD:284877 12/63 (19%)
EGF_2 170..200 CDD:285248 10/32 (31%)
Stab2XP_038934441.1 EGF_CA 254..283 CDD:419698 5/28 (18%)
EGF_3 334..369 CDD:403986 10/45 (22%)
Fasciclin 390..512 CDD:396845 15/121 (12%)
Fasciclin 533..658 CDD:396845 29/144 (20%)
EGF_3 840..868 CDD:403986
EGF_3 881..912 CDD:403986
EGF_3 923..955 CDD:403986
EGF_3 961..997 CDD:403986
Fasciclin 1014..1133 CDD:396845
Fasciclin 1152..1269 CDD:396845
EGF_3 1478..1514 CDD:403986
EGF_3 1520..1556 CDD:403986
EGF_3 1562..1598 CDD:403986
Fasciclin 1629..1729 CDD:396845
Fasciclin 1754..1885 CDD:396845
EGF_CA 2059..2084 CDD:419698
EGF_3 2090..2125 CDD:403986
EGF_3 2131..2168 CDD:403986
Link_Domain 2202..2294 CDD:413401
FAS1 2360..2449 CDD:214719
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG1218
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.900

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