DRSC/TRiP Functional Genomics Resources

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Protein Alignment Prosbeta5R2 and pbs-4

DIOPT Version :9

Sequence 1:NP_001286022.1 Gene:Prosbeta5R2 / 318924 FlyBaseID:FBgn0051742 Length:279 Species:Drosophila melanogaster
Sequence 2:NP_491261.1 Gene:pbs-4 / 171975 WormBaseID:WBGene00003950 Length:202 Species:Caenorhabditis elegans


Alignment Length:165 Identity:34/165 - (20%)
Similarity:65/165 - (39%) Gaps:20/165 - (12%)


- Green bases have known domain annotations that are detailed below.


  Fly    75 VGFVYQGGIILCVDSRAT--SGKLIGSQSIHKVVQVNQYIMGTTAGGAADCTYWDRALTRECRLH 137
            ||...:..:||..| :||  .|.::......|..::.:.:.....|...|...:.....|..:|:
 Worm     8 VGISTENYVILAAD-KATFAYGAILADSENDKEYRLGKKLTMMCIGEEGDVAQFGDWTKRNLQLY 71

  Fly   138 ELRYKERLPVQSAAKYISNVAAEYKGMGL------CMGMMLAGWSPEGP-----SLVYVDSNGLR 191
            .:|....:....|..::....||    ||      .:.:::.|:..:..     |:.|: :|||.
 Worm    72 SVRNGYEVSPSCAHHFVRRSIAE----GLRSQDHYTVDVLIGGYDDKEDKAFLGSVDYL-ANGLG 131

  Fly   192 IHGKLFAVGSGAPNALGILDSDYRLDLSDNEAYDL 226
            ....||. |........|:|.:|:.|:::.|...|
 Worm   132 QQPYLFR-GFCGRFCYAIMDREYKKDMTEAEGLAL 165

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Prosbeta5R2NP_001286022.1 PTZ00488 46..279 CDD:185666 34/165 (21%)
proteasome_beta_type_5 72..259 CDD:239730 34/165 (21%)
pbs-4NP_491261.1 proteasome_beta_type_2 4..199 CDD:239727 34/165 (21%)
PRE1 8..199 CDD:223711 34/165 (21%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG0638
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
21.810

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