DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Kdm4B and GIS1

DIOPT Version :10

Sequence 1:NP_001260942.1 Gene:Kdm4B / 318918 FlyBaseID:FBgn0053182 Length:717 Species:Drosophila melanogaster
Sequence 2:NP_010381.1 Gene:GIS1 / 851670 SGDID:S000002503 Length:894 Species:Saccharomyces cerevisiae


Alignment Length:734 Identity:150/734 - (20%)
Similarity:265/734 - (36%) Gaps:219/734 - (29%)


- Green bases have known domain annotations that are detailed below.


  Fly     9 IKVFRPTWEEFKDFPKYVAYMESQGAHKAGLAKVVPPPEWVPRRSGYADLDAL-NVTIPAPICQV 72
            :.||:|:..||.:|..::..:...|... |:.||:||.||:....|....::| .:.:.:||.|.
Yeast    12 VPVFKPSMMEFANFQYFIDEITKFGIEN-GIVKVIPPKEWLELLEGSPPAESLKTIQLDSPIQQQ 75

  Fly    73 V----TGKQGYYQQIN-IQKKPLTVKQFSELAST--ERYATPKHFDFED---------------- 114
            .    ..:.|.:...| ...|...:.|:..||.:  .|.:   ..||.|                
Yeast    76 AKRWDKHENGVFSIENEYDNKSYNLTQWKNLAESLDSRIS---QGDFNDKTLKENCRVDSQQDCY 137

  Fly   115 -------LERKYWKNITYVAPIYGADVSGSITDTDQDSWNINRLGTILDYVNKDYNIQIDGVNTA 172
                   ||..:||.|.:..|.|..|.:.||...|...||:|.|.              |.:|::
Yeast   138 DLAQLQILESDFWKTIAFSKPFYAVDENSSIFPYDLTLWNLNNLP--------------DSINSS 188

  Fly   173 --YLYFGMWKTTFAWHTEDMDLYSINYLHFGAPKTWYVVPPECGRKLEKVANQYFPASYKNCNAY 235
              .|..|..|..|.||.::.:..|||||||||||.||.:|.....:..|:.::...::.:||.|:
Yeast   189 NRRLLTGQSKCIFPWHLDEQNKCSINYLHFGAPKQWYSIPSANTDQFLKILSKEPSSNKENCPAF 253

  Fly   236 LRHKMTLISPQILKQHDVPVSKITQEAGEIMITFPFGYHAGFNHGFNCAESTNFAMERWIEYGKR 300
            :||:..:.||..|:::::..:::.|...|.:||||:..::|||:|:|..||..|.:::.....|:
Yeast   254 IRHQNIITSPDFLRKNNIKFNRVVQFQHEFIITFPYCMYSGFNYGYNFGESIEFILDQQAVVRKQ 318

  Fly   301 AVQCTCSNDMVKISMDTFVKRFQSDRYDLWMEGRDVGRHPEDPPNAVLSAAPLPPHLDVLLCDKK 365
            .::|.|.|                                                       ||
Yeast   319 PLKCGCGN-------------------------------------------------------KK 328

  Fly   366 MKKQCNPTKAKSFKERNPDLDLDEIQQNPNVPDDVKAMLKESVLTLDTGDLATDEADFPNEDAMS 430
            .:::..|....|:       |.:|.:|..::.|:...:. :.|.:.|         :..|..:..
Yeast   329 EERKSGPFSNLSY-------DSNESEQRGSITDNDNDLF-QKVRSFD---------ELLNHSSQE 376

  Fly   431 LQSPANLKTKQELLEYIDDGTEDDDEEEDFKRRKQKRRYDADYDDDWLASKRKTNSRNNRGRSPR 495
            ||   ||               :|::...|                       :|...||.:|  
Yeast   377 LQ---NL---------------EDNKNPLF-----------------------SNINMNRPQS-- 398

  Fly   496 TKDDRSISPASSTSSTSRGARRGKASGTPRKTPARRKKDSITTSPAVSSAATAVKTPTSAVVAGT 560
                     :|..|:|..|..:                       .::...|.:...:|.:::..
Yeast   399 ---------SSLRSTTPNGVNQ-----------------------FLNMNQTTISRISSPLLSRM 431

  Fly   561 TSIATTTTPPADGGGDAKKER----QSLQFMQQSRKFEGKIPKLSQTSAATGGATAAAEASTSKS 621
            ..::....|..|..|...|.:    |..|....|.......|.|:.|::.....||.:...::.:
Yeast   432 MDLSNIVEPTLDDPGSKFKRKVLTPQLPQMNIPSNSSNFGTPSLTNTNSLLSNITATSTNPSTTT 496

  Fly   622 SQGQQQQIVY---VNMLPAANTLNGIPQQQQQQQYASTDGNVYQLQNEIL--------------C 669
            :..|....|.   :|...||:..|.|.........:|::.||..:.:.::              .
Yeast   497 NGSQNHNNVNANGINTSAAASINNNISSTNNSANNSSSNNNVSTVPSSMMHSSTLNGTSGLGGDN 561

  Fly   670 DANGHAVTAATASYQTTAS 688
            |.|..|::.||.:...|||
Yeast   562 DDNMLALSLATLANSATAS 580

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Kdm4BNP_001260942.1 JmjN 5..50 CDD:128818 14/40 (35%)
JmjC 173..289 CDD:396791 42/115 (37%)
GIS1NP_010381.1 JmjN 11..52 CDD:128818 14/40 (35%)
JmjC 191..307 CDD:396791 42/115 (37%)
PHA00733 <828..879 CDD:177301
zf-C2H2_4 828..851 CDD:464025
C2H2 Zn finger 830..851 CDD:275368
C2H2 Zn finger 859..876 CDD:275368
Blue background indicates that the domain is not in the aligned region.

Return to query results.
Submit another query.