DRSC/TRiP Functional Genomics Resources

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Protein Alignment Kdm4B and JMJ18

DIOPT Version :10

Sequence 1:NP_001260942.1 Gene:Kdm4B / 318918 FlyBaseID:FBgn0053182 Length:717 Species:Drosophila melanogaster
Sequence 2:NP_174367.6 Gene:JMJ18 / 839963 AraportID:AT1G30810 Length:819 Species:Arabidopsis thaliana


Alignment Length:388 Identity:112/388 - (28%)
Similarity:163/388 - (42%) Gaps:119/388 - (30%)


- Green bases have known domain annotations that are detailed below.


  Fly    11 VFRPTWEEFKDFPKYVAYMES--QGAHKAGLAKVVPPPEWVPRRSGYADLDALNVTIPAPICQVV 73
            ||.|:.|||.| |  :||:|.  ..|...|:.:::||..|.|               |..:.:..
plant    61 VFTPSLEEFVD-P--LAYIEKIRPLAEPYGICRIIPPSTWKP---------------PCRLKEKS 107

  Fly    74 TGKQGYY----QQINI-------QKKPLTVKQ----------------FSELAST---------- 101
            ..:|..:    |.:::       :|||.:.|:                .|...||          
plant   108 IWEQTKFPTRIQTVDLLQNREPMKKKPKSRKRKRRRNSRMGSSKRRSGSSPAESTSSPEAEEKFG 172

  Fly   102 ------------ERYATPKHF-------------------DFEDLERKYWKNITY----VAPIYG 131
                        |:||.  ||                   ..:|:|.:||:.:..    |...||
plant   173 FNSGSDFTLDEFEKYAL--HFKDSYFEKKDSGGDIVKWTPSVDDIEGEYWRIVEQPTDEVEVYYG 235

  Fly   132 ADVSGSI--------------TDTDQ---DSWNINRL----GTILDYVNKDYNIQIDGVNTAYLY 175
            ||:...:              :|.:|   ..||:|.|    |::|.:.:.|    |.||...:||
plant   236 ADLENGVLGSGFYKRAEKFTGSDMEQYTLSGWNLNNLPRLPGSVLSFEDCD----ISGVLVPWLY 296

  Fly   176 FGMWKTTFAWHTEDMDLYSINYLHFGAPKTWYVVPPECGRKLEKVANQYFPASYKNCNAYLRHKM 240
            .||..::|.||.||..|||:||.|||.||.||.||......|||...::.|..::.....|...:
plant   297 VGMCFSSFCWHVEDHHLYSLNYHHFGEPKVWYGVPGSNATALEKAMRKHLPDLFEEQPDLLHGLV 361

  Fly   241 TLISPQILKQHDVPVSKITQEAGEIMITFPFGYHAGFNHGFNCAESTNFAMERWIEYGKRAVQ 303
            |..||.|||...|...::.|.:||.::|||..||||||.||||||:.|.|...|:.:|:.||:
plant   362 TQFSPSILKDEGVQAYRVVQNSGEYVLTFPRAYHAGFNCGFNCAEAVNVAPVDWLAHGQNAVE 424

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Kdm4BNP_001260942.1 JmjN 5..50 CDD:128818 16/40 (40%)
JmjC 173..289 CDD:396791 53/115 (46%)
JMJ18NP_174367.6 JmjN 59..99 CDD:128818 16/40 (40%)
JmjC 294..410 CDD:396791 53/115 (46%)
zf-C5HC2 519..571 CDD:460750
FYRN 658..702 CDD:128814
FYRC 708..794 CDD:197781
Blue background indicates that the domain is not in the aligned region.

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