DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Kdm4B and ELF6

DIOPT Version :9

Sequence 1:NP_001260942.1 Gene:Kdm4B / 318918 FlyBaseID:FBgn0053182 Length:717 Species:Drosophila melanogaster
Sequence 2:NP_196044.2 Gene:ELF6 / 830303 AraportID:AT5G04240 Length:1340 Species:Arabidopsis thaliana


Alignment Length:1016 Identity:204/1016 - (20%)
Similarity:336/1016 - (33%) Gaps:360/1016 - (35%)


- Green bases have known domain annotations that are detailed below.


  Fly     3 MSEVPRIKVFRPTWEEFKDFPKYVAYMESQGAHKAGLAKVVPP--------------------PE 47
            :..:|...|||||..||.|...|::.:|.: |...|:.|::||                    ||
plant    10 LKALPLAPVFRPTDTEFADPIAYISKIEKE-ASAFGICKIIPPLPKPSKKYVFYNLNKSLLKCPE 73

  Fly    48 WVPRRSGYADLD---------ALNVTIPAPICQVVTGKQGYYQQINIQKKPL----------TVK 93
            .|      :|:|         |:..|....:.|.|...:|...:.|.|:..:          |:.
plant    74 LV------SDVDISKVCKEDRAVFTTRQQELGQTVKKNKGEKGKSNSQRSGVKQVWQSGGVYTLD 132

  Fly    94 QFSELASTERY----ATPKHFDFEDLERKYWKNITYVAPI---YGADVSGSITDTDQD------- 144
            || |..|...|    .|.|......:|..:|| .....||   |..||.||.....:|       
plant   133 QF-EAKSKAFYKTQLGTVKELAPVVIEALFWK-AALEKPIYIEYANDVPGSAFGEPEDHFRHFRQ 195

  Fly   145 ----------------------------------------------------------------- 144
                                                                             
plant   196 RKRRGRGFYQRKTENNDPSGKNGEKSSPEVEKAPLASTSLSSQDSSKQKNMDIVDEMEGTAGWKL 260

  Fly   145 ---SWNINRL----GTILDYVNKDYNIQIDGVNTAYLYFGMWKTTFAWHTEDMDLYSINYLHFGA 202
               |||:..:    |::..::..|    |.||.:..:|.||..:.||||.||.:|:|:||||.|:
plant   261 SNSSWNLQMIARSPGSVTRFMPDD----IPGVTSPMVYIGMLFSWFAWHVEDHELHSMNYLHTGS 321

  Fly   203 PKTWYVVPPECGRKLEKVANQYFPASYKNCNAY------------LRHKMTLISPQILKQHDVPV 255
            |||||.||.:.....|:|..:         |:|            |..|.||:||:::....:|.
plant   322 PKTWYAVPCDYALDFEEVIRK---------NSYGRNIDQLAALTQLGEKTTLVSPEMIVASGIPC 377

  Fly   256 SKITQEAGEIMITFPFGYHAGFNHGFNCAESTNFAMERWIEYGKR-AVQCTCSNDMVKISMD--- 316
            .::.|..||.::|||..||.||:|||||.|:.||...:|:...|. ||:....|.:..:|..   
plant   378 CRLVQNPGEFVVTFPRSYHVGFSHGFNCGEAANFGTPQWLNVAKEAAVRRAAMNYLPMLSHQQLL 442

  Fly   317 -----TFVKRF--------QSDRY------------------DLWMEGRDVGRHPEDPPNAVLSA 350
                 :||.|.        :|.|.                  |:..|.:::.....:|.:.::..
plant   443 YLLTMSFVSRVPRSLLPGGRSSRLRDRQREEREFLVKRAFVEDILNENKNLSVLLREPGSRLVMW 507

  Fly   351 AP--LPPHLDVLL----------------CDKKMKKQCNPTKAKSFKERNPDLDLDEIQQNPNVP 397
            .|  ||.|..:.|                ..|::::..:..:.|.......:|.|...:.|....
plant   508 DPDLLPRHSALALAAAGVAGASAVSPPAVAKKELEEGHSELQNKEKTSLLEELSLFMEKLNDVYY 572

  Fly   398 DDVKAMLKESVLTLDTGDL---ATDEADFPNEDAMSLQSPANLKTKQELLEYIDDGTEDDDEEED 459
            ||...:|.:  ..:|||.|   |.....||   .||:..|:     ::.|:.:.:...:.|.:|.
plant   573 DDDDGLLND--FQVDTGTLPCVACGVLGFP---FMSVVQPS-----EKALKDLSERQGETDAQEI 627

  Fly   460 FKRRKQKRRYDADYDDDWLASKRKTNSR--------------NNRG------------------- 491
            .....:|.      |.:|..|.|....|              .:||                   
plant   628 MTLSSEKS------DCEWKTSSRYIRPRIFCLEHTIELQRLLQSRGGLKFLVICHKDFQKFKAHA 686

  Fly   492 -------RSPRTKDDRSISPAS-------------------STSSTSR-GARRGKASGTPRKTPA 529
                   :.|.:.||..:..||                   |...||. |..........:.:|.
plant   687 AIVAEEVKVPFSYDDVLLESASQEELSLIDLAIEDEEKYEHSVDWTSELGINLRYCVKVRKNSPT 751

  Fly   530 RRKKDSITTSPAVSSAATAV----------KTPTSAVVAGTTSIATTTTP------PADG----- 573
            ::.:.:::.....|..:..:          |:.:.|..:.|:|.    ||      .|||     
plant   752 KKIQHALSLGGLFSDTSQMLDFTTIRWLQRKSRSKAKPSSTSSF----TPCEHLEVKADGKLRDN 812

  Fly   574 --GGDAKKERQSLQF--------------------MQQSRKFEGKIPKLSQTSAATGGATAAAEA 616
              ....|||.:.:|:                    :.:|:.|:......|..|...     :|..
plant   813 LDSQTGKKEEKIIQYSRKKKLNPKPSAEQVQELATLAKSKDFDKTCKNFSSRSHLD-----SAIR 872

  Fly   617 STSKSSQGQQQQIVYV--NMLPAANTLNGIPQQQQQQQY-----ASTDGNVYQLQNEILCDANGH 674
            |...|..|...:::.|  ::.|.:::.. :...|:..:.     :..||||    ...|...||.
plant   873 SEMNSEIGDSGRVIGVSFSINPCSSSFT-VGHGQEHPEITVKFGSDLDGNV----TNSLSMVNGD 932

  Fly   675 AVTAATASYQTTASSPQQQQQQQQQQQNVATSVAATIYQRQ 715
                 :|....|:.|.:|.|.......|..::..:.:...|
plant   933 -----SADLTLTSISREQHQGHSMTSNNNGSNSGSHVVASQ 968

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Kdm4BNP_001260942.1 JmjN 11..44 CDD:280526 13/32 (41%)
JmjC 173..289 CDD:202224 50/127 (39%)
ELF6NP_196044.2 JmjN 17..50 CDD:396793 13/33 (39%)
JmjC 292..411 CDD:396791 50/127 (39%)
C2H2 Zn finger 1230..1255 CDD:275368
C2H2 Zn finger 1253..1275 CDD:275368
C2H2 Zn finger 1283..1305 CDD:275368
C2H2 Zn finger 1313..1333 CDD:275368
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 1 0.960 - -
21.870

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