DRSC/TRiP Functional Genomics Resources

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Protein Alignment Kdm4B and REF6

DIOPT Version :10

Sequence 1:NP_001260942.1 Gene:Kdm4B / 318918 FlyBaseID:FBgn0053182 Length:717 Species:Drosophila melanogaster
Sequence 2:NP_680116.2 Gene:REF6 / 824002 AraportID:AT3G48430 Length:1360 Species:Arabidopsis thaliana


Alignment Length:776 Identity:175/776 - (22%)
Similarity:279/776 - (35%) Gaps:233/776 - (30%)


- Green bases have known domain annotations that are detailed below.


  Fly     3 MSEVPRIKVFRPTWEEFKDFPKYVAYMESQGAHKAGLAKVVPPPEWVPRRSGYADLDALNVTIPA 67
            :..:|....||||..||:|...|:..:|.: |.:.|:.|::||   :|..|....:..||.::.|
plant    14 LKSLPVAPEFRPTLAEFQDPIAYILKIEEE-ASRYGICKILPP---LPPPSKKTSISNLNRSLAA 74

  Fly    68 -PICQVVTGKQG------------YYQQINIQKKPLTVKQFSELASTERYATPKHFDFE------ 113
             ...:|..|..|            ..|||....:.....|.....|.|.|:..: |:|:      
plant    75 RAAARVRDGGFGACDYDGGPTFATRQQQIGFCPRKQRPVQRPVWQSGEEYSFGE-FEFKAKNFEK 138

  Fly   114 ---------------DLERKYWKNITYVAPI---YGADVSGSI------------------TDTD 142
                           ::|..||: .|...|.   |..|:.||.                  ....
plant   139 NYLKKCGKKSQLSALEIETLYWR-ATVDKPFSVEYANDMPGSAFIPLSLAAARRRESGGEGGTVG 202

  Fly   143 QDSWNINRL----GTILDYVNKDYNIQIDGVNTAYLYFGMWKTTFAWHTEDMDLYSINYLHFGAP 203
            :.:||:..:    |::|.::.:    :|.||.:..:|..|..:.||||.||.||:|:||||.||.
plant   203 ETAWNMRAMSRAEGSLLKFMKE----EIPGVTSPMVYVAMMFSWFAWHVEDHDLHSLNYLHMGAG 263

  Fly   204 KTWYVVPPECGRKLEKVANQYFPASYKN---CNAYLRHKMTLISPQILKQHDVPVSKITQEAGEI 265
            ||||.||.:.....|:|...:......|   ..:.|..|.|::||::..:..:|..::.|..||.
plant   264 KTWYGVPKDAALAFEEVVRVHGYGEELNPLVTFSTLGEKTTVMSPEVFVKAGIPCCRLVQNPGEF 328

  Fly   266 MITFPFGYHAGFNHGFNCAESTNFAMERWIEYGKRAVQCTCSNDMVKISMDTFVKRFQSDRYDLW 330
            ::|||..||:||:||||..|::|.|...|:...|                |..::|         
plant   329 VVTFPGAYHSGFSHGFNFGEASNIATPEWLRMAK----------------DAAIRR--------- 368

  Fly   331 MEGRDVGRHPEDPPNAVLSAAPLPPHLD-----VLLCDKKMKKQCNP--------TKAKSFKER- 381
                           |.::..|:..||.     ||....::....||        .||:|..|| 
plant   369 ---------------AAINYPPMVSHLQLLYDFVLALGSRVPTSINPKPRSSRLKDKARSEGERL 418

  Fly   382 NPDLDLDEIQQN----------------PNVPDDVKAML-----------KESVLTLDTGDLATD 419
            ...|.:..|..|                |....|:....           :|:.:.|...||::|
plant   419 TKKLFVQNIIHNNELLSSLGKGSPVALLPQSSSDISVCSDLRIGSHLITNQENPIQLKCEDLSSD 483

  Fly   420 E--ADFPNEDAMSLQSPANLKTK-QELLEYIDD---GTEDDDEE--EDFKRRKQ----------- 465
            .  .|..|    .|:...::|.| ..|.|...:   .||.|.:|  .|.:|||.           
plant   484 SVVVDLSN----GLKDTVSVKEKFTSLCERSRNHLASTEKDTQETLSDAERRKNDAAVALSDQRL 544

  Fly   466 ----------------------KRRY----DADYDDDWLASKRKTN-SRNNRGRSPRTKDDRSIS 503
                                  ..||    |..:.:||.|:....| .:..|...|::|:...::
plant   545 FSCVTCGVLSFDCVAIVQPKEAAARYLMSADCSFFNDWTAASGSANLGQAARSLHPQSKEKHDVN 609

  Fly   504 -----PASSTS-STSRGARRGKASGTPRKTPARRKKDSI--------TTSPAVSSAATAVKTPTS 554
                 |..:.. |...|.::   :.|...|.|.:..|.:        .:|.:.......:.||:|
plant   610 YFYNVPVQTMDHSVKTGDQK---TSTTSPTIAHKDNDVLGMLASAYGDSSDSEEEDQKGLVTPSS 671

  Fly   555 AVVAGTTSIATTTTPPADGGGDAKKERQSLQFMQQSRKFEGKIPKLSQTSAATGGATAAAE 615
               .|.|.  |.....:||..:|:..|.| .|..|....|       |...:.||.::..|
plant   672 ---KGETK--TYDQEGSDGHEEARDGRTS-DFNCQRLTSE-------QNGLSKGGKSSLLE 719

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Kdm4BNP_001260942.1 JmjN 5..50 CDD:128818 15/44 (34%)
JmjC 173..289 CDD:396791 47/118 (40%)
REF6NP_680116.2 JmjN 21..52 CDD:460542 11/31 (35%)
JmjC 233..351 CDD:396791 47/117 (40%)
zf-C2H2_8 1245..1330 CDD:464935
C2H2 Zn finger 1245..1266 CDD:275368
C2H2 Zn finger 1268..1290 CDD:275368
C2H2 Zn finger 1298..1320 CDD:275368
C2H2 Zn finger 1328..1348 CDD:275368
Blue background indicates that the domain is not in the aligned region.

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