DRSC/TRiP Functional Genomics Resources

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Protein Alignment Kdm4B and KDM4D

DIOPT Version :9

Sequence 1:NP_001260942.1 Gene:Kdm4B / 318918 FlyBaseID:FBgn0053182 Length:717 Species:Drosophila melanogaster
Sequence 2:NP_060509.2 Gene:KDM4D / 55693 HGNCID:25498 Length:523 Species:Homo sapiens


Alignment Length:592 Identity:238/592 - (40%)
Similarity:315/592 - (53%) Gaps:141/592 - (23%)


- Green bases have known domain annotations that are detailed below.


  Fly     9 IKVFRPTWEEFKDFPKYVAYMESQGAHKAGLAKVVPPPEWVPRRSGYADLDALNVTIPAPICQVV 73
            |.:|.||.|||.||.||:|||||||||:|||||::||.||..|.: |.::.  .:.|..|:.||.
Human    18 IMIFHPTKEEFNDFDKYIAYMESQGAHRAGLAKIIPPKEWKARET-YDNIS--EILIATPLQQVA 79

  Fly    74 TGKQGYYQQINIQKKPLTVKQFSELASTERYATPKHFDFEDLERKYWKNITYVAPIYGADVSGSI 138
            :|:.|.:.|.:.:||.:||.::..||::::|.||.|.:|||||||||||..|.:||||||:|||:
Human    80 SGRAGVFTQYHKKKKAMTVGEYRHLANSKKYQTPPHQNFEDLERKYWKNRIYNSPIYGADISGSL 144

  Fly   139 TDTDQDSWNINRLGTILDYVNKDYNIQIDGVNTAYLYFGMWKTTFAWHTEDMDLYSINYLHFGAP 203
            .|.:...||:..||||.|.:.|:..:.|:||||.|||||||||||||||||||||||||||.|.|
Human   145 FDENTKQWNLGHLGTIQDLLEKECGVVIEGVNTPYLYFGMWKTTFAWHTEDMDLYSINYLHLGEP 209

  Fly   204 KTWYVVPPECGRKLEKVANQYFPASYKNCNAYLRHKMTLISPQILKQHDVPVSKITQEAGEIMIT 268
            |||||||||.|::||::|.:.||.|.:.|.|:||||:.||||.:||::.:|.::|||||||.|:|
Human   210 KTWYVVPPEHGQRLERLARELFPGSSRGCGAFLRHKVALISPTVLKENGIPFNRITQEAGEFMVT 274

  Fly   269 FPFGYHAGFNHGFNCAESTNFAMERWIEYGKRAVQCTCSNDMVKISMDTFVKRFQSDRYDLWMEG 333
            ||:||||||||||||||:.|||..|||:|||.|.||:|....|..|||.||:..|.:|||||..|
Human   275 FPYGYHAGFNHGFNCAEAINFATPRWIDYGKMASQCSCGEARVTFSMDAFVRILQPERYDLWKRG 339

  Fly   334 RDVGRHPEDPPNAVLSAAPLPPHLDVLLCDKKMKKQCNPTKAKSFKERNPDLDLDEIQQNPNVPD 398
            :|         .||:.      |::                                   |.|| 
Human   340 QD---------RAVVD------HME-----------------------------------PRVP- 353

  Fly   399 DVKAMLKESVLTLDTGDLATD-EADFPNEDAMSLQ---------SP----ANLKTKQELLEYIDD 449
                         .:.:|:|. |...|...|:.|:         ||    |...|:...|.    
Human   354 -------------ASQELSTQKEVQLPRRAALGLRQLPSHWARHSPWPMAARSGTRCHTLV---- 401

  Fly   450 GTEDDDEEEDFKRRKQKRRYDADYDDDWLASKRKTNSRNNRGRSPRTKDDRSISPASSTSSTSRG 514
                                        .:|..:.::.:.....||.....|....|||.|::.|
Human   402 ----------------------------CSSLPRRSAVSGTATQPRAAAVHSSKKPSSTPSSTPG 438

  Fly   515 ----------ARRGKASGTPRKTPARRKKDSITTSPAVSSAATAVKTPTSAVVAGTTSIATTTTP 569
                      .|||:  |.|   |.:.:...:|..       |..|.|   ::||||..|:...|
Human   439 PSAQIIHPSNGRRGR--GRP---PQKLRAQELTLQ-------TPAKRP---LLAGTTCTASGPEP 488

  Fly   570 ---PADG 573
               |.||
Human   489 EPLPEDG 495

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Kdm4BNP_001260942.1 JmjN 11..44 CDD:280526 24/32 (75%)
JmjC 173..289 CDD:202224 83/115 (72%)
KDM4DNP_060509.2 JmjN 19..53 CDD:280526 24/33 (73%)
JmjC 179..295 CDD:202224 83/115 (72%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 407..523 27/104 (26%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 1 1.000 210 1.000 Domainoid score I2814
eggNOG 1 0.900 - - E1_COG5141
Hieranoid 1 1.000 - -
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 1 1.000 - - FOG0000582
OrthoInspector 1 1.000 - - mtm8529
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 1 0.960 - -
User_Submission 00.000 Not matched by this tool.
76.770

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